Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01726 ATGGCCGGAAACTGCTTGCCGTCGGTGAAGCTCACCGGCAGTGGCCGCCCGGTGCTCGAACCGAACGAAATCGAATGCTTCTTCCTCTCCGGCGTGGACCTTCTCTGCGAAGACGAACCAAACACGAGCTTCCCCCACCTCAAATCTGGTCTCCTCATCCTCACCACGCAccgcctcctctggctcccggactccgccgcaggcgccgcctcctccgccgccgccgtccccctccccgccATCTCCCATATTTTCTCCCACAAGAAGTCCATCCGGTCCGTCTTCGCCTCGCCGCGGGTCCGCTTCCAGGTGTCGCTCTCGCCGGAGGGCAGGGTGGCGGCGTCGGGATCGCGATCGGTGGTGGCGACGGTGGTGGTGAGGGGGAAGGGGGACTGCGACGCGTTCCTGACCAAGTTTTGGGAGAATTGGCGCGCCAGGGCGTGGGAGGAGGCGGAGAGTGGCTCGAGCTCTGGCTCAAATgcggcggcggcggtgtcggcaacggcggcagcgTCCTCGAGCGGGATTTATTCGAGTGACGGGACGGTGAGGATGGTGGGAGTGTCGGGGATATTGAGGAAGGAGCAGGAAATGTGGGAGAGTACTGATAGGAGCTTGCAGGAGGCTTTTCAGGATTTGAATGCTCTTATGAGCAAGGCTAAAGAGATGGTGGTGCTTGCCGAGAAAATGAGGTTAAAACTTTTGTCTGGCTCAAATTCCCAAACCAATGCAACTAATGATGAGGAGCTGGGTTCAAAGGAAGAGATGCAAGATTGGTTATTGAGTGTTGGTATTATATCCCCTGTTACCAAAGAGTCTGCGGGTGCTTTGTATCATCAACAGCTTTCTCGTCAGTTGGCAGATTTTGTTAAAGTTCCACTTGAGAGAGCTGGGGGAATTATCAATCTTATTGACATATATTGTCTCTTTAATCGTGCTCGTGGCACAGAATTGATCTCACCTGATGATTTATTGCAAGCATGTTCTCTGTGGGAGAAGTTTGATGTCCCAGTGGTTCTGCGAAAGTTTGATAGTGGAGTCATGGTAATACAAACTAAGTCCCATAGTGATGAGGAGGTTTTTGCTAAAATCAAGATGCTTGTTATGAAACCTGATACTCTTCGAGCTGGGATAAGTGCTAGTGATGCTGCAAGGACACTAGGGGTTGCCCCAACAATGGCAAAGGAGCATCTCTTGTCTGCTGAGAGCAAGGGTATGCTGCTGGATCTCTTTCTTCAATACTTTAAGCTACATAACCGACTTCTGATTTTTATGGAATCTTTCCCAGGTTTACTATGCAGAGATGTAAGCCCTGATGGGTTTCGCTTTTATATCAACTTGTTCTCTGAAATTGATCGAGATGATATGTGTTTAGTGAAAGATCAGGGAATTTATGCCTCCTTGTTCAATTCAAGGCGTTTGAGGTTGTTTATGTTGAAAGACATGTCTAAAGTATCCTGCCATAACGTGACCAGAGGAAGATATGCTGATGGGCAATTTATACTAGGATGTTCAAGATTGAAGTAA 1527 0.4506 MAGNCLPSVKLTGSGRPVLEPNEIECFFLSGVDLLCEDEPNTSFPHLKSGLLILTTHRLLWLPDSAAGAASSAAAVPLPAISHIFSHKKSIRSVFASPRVRFQVSLSPEGRVAASGSRSVVATVVVRGKGDCDAFLTKFWENWRARAWEEAESGSSSGSNAAAAVSATAAASSSGIYSSDGTVRMVGVSGILRKEQEMWESTDRSLQEAFQDLNALMSKAKEMVVLAEKMRLKLLSGSNSQTNATNDEELGSKEEMQDWLLSVGIISPVTKESAGALYHQQLSRQLADFVKVPLERAGGIINLIDIYCLFNRARGTELISPDDLLQACSLWEKFDVPVVLRKFDSGVMVIQTKSHSDEEVFAKIKMLVMKPDTLRAGISASDAARTLGVAPTMAKEHLLSAESKGMLLDLFLQYFKLHNRLLIFMESFPGLLCRDVSPDGFRFYINLFSEIDRDDMCLVKDQGIYASLFNSRRLRLFMLKDMSKVSCHNVTRGRYADGQFILGCSRLK 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01726 508 Pfam Vacuolar protein sorting protein 36 Vps36 11 104 IPR021648 GO:0032266|GO:0043130
Cca04g01726 508 Pfam EAP30/Vps36 family 186 407 IPR040608 -
Cca04g01726 508 ProSiteProfiles GLUE domain profile. 9 155 IPR021648 GO:0032266|GO:0043130
Cca04g01726 508 PANTHER VACUOLAR PROTEIN-SORTING-ASSOCIATED PROTEIN 36 7 455 IPR037855 GO:0000814|GO:0032509|GO:0043130
Cca04g01726 508 SUPERFAMILY PH domain-like 5 123 - -
Cca04g01726 508 Gene3D - 354 408 IPR036388 -
Cca04g01726 508 Gene3D - 201 274 - -
Cca04g01726 508 SUPERFAMILY "Winged helix" DNA-binding domain 268 351 IPR036390 -
Cca04g01726 508 Gene3D - 10 155 IPR011993 -
Cca04g01726 508 Gene3D - 275 352 IPR036388 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01726 04 29653832 29690246 Cca04g01726 04 29653832 29690246 ECH