Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01724 ATGAAGAGGTCTCCAGCAtcttcttgttcatcatcttcttctGTTGGAATTGAAACTCCCATTCAGTCAGAGAAAAGAAGGCCTAAGCATCCAAGGAGAAATTTGAAGTCACAAAAATGCAACCAGGACCAAACCAATGGGGGAAGAAGCTCCATTTATAGGGGAGTTACCAGGCATAGGTGGACAGGGAGGTTTGAAGCTCACCTGTGGGATAAGACCTCTTGGAACAACATTCAGGGCAAGAAGGGACGACAAGTTTATTTGGGGGCATATGATACTGAAGAAGCTGCAGCCCGTACATATGATCTTGCTGCCCTTAAGTACTGGGGGAAGGATGCAACCTTGAATTTCCCGATAGAAAATTATACCAAGGATCTTGAGGAAATTGACAAGGCCTCGAAAGAAGAATATTTGGCTTCTTTGCGGCGTCAAAGCAGTGGTTTTTCTAGAGGCATTTCTAAGTATCGCGGAGTTGCTAGGCATCATCATAATGGTCGCTGGGAAGCTCGCATTGGAAGAGTATGTGGAAACAAGTACCTCTACTTGGGAACATTTAAAACTCAAGAGGAAGCAGCTGTGGCATATGACATGGCAGCAATAGAGTACCGTGGAGTCAATGCAGTGACCAATTTTGACATAAGCAATTACATGGACAAAATAAAGAAGAAAAATGACCAAACAGAAACACAAACAGCTCCTAACTCCTCTGACTCTGAAGAAGCAGAAGTAGAACAACACACAAAAGTTACACCACCCCCATCTGAGAATCTGCACATGCCACCACAGCATCAGGACCAAGTTGAACACACTAATGAAGAAGAACCCTCAATGACCACTATGATGGAGCATGTGCTGGACCAGGATCTACCCTGGAGCCTCATGTACAGTGGCTTGTCTGAGCTTGAACAACCACACTTGGGTTTTGGTGGTGGAAAAGCTGATGATTTGGCTTGCATGTTTGATGGTGCAGCCTTTGATGAAGACATTGATTATCTGTTTAGCACAGAGCCTGGTGGGACTGAGAATGATATCAACGTGAGGGCAGTGTTTGACAGTATTGAGAGTAGAGACACAAATGAGGCTGGTGGAAGAATCATTGTGGGGGATGATCATGACAATAAGCACAAGATGTCACCATTTGCATCTTCTTCTTCACCATCATCTACAACAACTACAGATTCTTGTAACTTAGCTTTATGA 1200 0.4333 MKRSPASSCSSSSSVGIETPIQSEKRRPKHPRRNLKSQKCNQDQTNGGRSSIYRGVTRHRWTGRFEAHLWDKTSWNNIQGKKGRQVYLGAYDTEEAAARTYDLAALKYWGKDATLNFPIENYTKDLEEIDKASKEEYLASLRRQSSGFSRGISKYRGVARHHHNGRWEARIGRVCGNKYLYLGTFKTQEEAAVAYDMAAIEYRGVNAVTNFDISNYMDKIKKKNDQTETQTAPNSSDSEEAEVEQHTKVTPPPSENLHMPPQHQDQVEHTNEEEPSMTTMMEHVLDQDLPWSLMYSGLSELEQPHLGFGGGKADDLACMFDGAAFDEDIDYLFSTEPGGTENDINVRAVFDSIESRDTNEAGGRIIVGDDHDNKHKMSPFASSSSPSSTTTTDSCNLAL 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01724 399 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 388 - -
Cca04g01724 399 MobiDBLite consensus disorder prediction 378 399 - -
Cca04g01724 399 MobiDBLite consensus disorder prediction 361 399 - -
Cca04g01724 399 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 2 388 - -
Cca04g01724 399 MobiDBLite consensus disorder prediction 1 20 - -
Cca04g01724 399 MobiDBLite consensus disorder prediction 361 377 - -
Cca04g01724 399 Pfam AP2 domain 153 204 IPR001471 GO:0003700|GO:0006355
Cca04g01724 399 Pfam AP2 domain 52 110 IPR001471 GO:0003700|GO:0006355
Cca04g01724 399 Gene3D AP2/ERF domain 52 120 IPR036955 GO:0003700|GO:0006355
Cca04g01724 399 Gene3D AP2/ERF domain 153 214 IPR036955 GO:0003700|GO:0006355
Cca04g01724 399 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Cca04g01724 399 PRINTS Ethylene responsive element binding protein signature 194 214 IPR001471 GO:0003700|GO:0006355
Cca04g01724 399 SMART rav1_2 154 218 IPR001471 GO:0003700|GO:0006355
Cca04g01724 399 SMART rav1_2 52 124 IPR001471 GO:0003700|GO:0006355
Cca04g01724 399 ProSiteProfiles AP2/ERF domain profile. 154 212 IPR001471 GO:0003700|GO:0006355
Cca04g01724 399 ProSiteProfiles AP2/ERF domain profile. 52 118 IPR001471 GO:0003700|GO:0006355
Cca04g01724 399 SUPERFAMILY DNA-binding domain 51 120 IPR016177 GO:0003677
Cca04g01724 399 CDD AP2 153 214 IPR001471 GO:0003700|GO:0006355
Cca04g01724 399 MobiDBLite consensus disorder prediction 223 276 - -
Cca04g01724 399 MobiDBLite consensus disorder prediction 1 53 - -
Cca04g01724 399 CDD AP2 51 119 IPR001471 GO:0003700|GO:0006355
Cca04g01724 399 MobiDBLite consensus disorder prediction 38 52 - -
Cca04g01724 399 SUPERFAMILY DNA-binding domain 153 214 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01724 Cca-Chr4 29586951 29593354 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01724 142 227 AP2-EREBP Transcription Factor Family AT5G57390 35.106 6.36e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Cca04g01724 AP2 3.3e-13 CL0081