Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01720 ATGAATGCAAAAATTTCAGATTTTGGAATTGCAAGAATGTTCACTCAACAAGAATCTGTATCAAATACCAATAGAATTGTTGGGACATATGGTTACATGTCTCCAGAATATGCCATGGAAGGAGTTTTCTCTACAAAGTCTGATGTTTACAGCTTTGGAGTGTTGCTACTTGAAATTGTTAGTGGAAGAAGAAACAATAGCTTTTATGATGATGATCATCCATCAAATCTAATAGGACATGCATGGGAGTTATGGAATGATGGCTTATGTCTACAATTATTGGATGCATCACTAAATGAGTCATTTGAGCATGATGAAGTGCAAAGATGCATTCATGTTGGTTTGTTGTGCGTTGAACAAAGTGCAAATGATCGACCCACAATGTCTGACATTATAACAATGTTGACAAACAAGAGTGCAATAGTTTCCTTACCTCAAAGACCAGCATTCTATGTCGGAGGAGAGATCTTTGATGAAAAATCATCTTCTAAAGAGTTGTGCACTACTTCTACAATAGAAGTTACTACTTCCATGAAAGTAGAATCTAACTGA 552 0.3569 MNAKISDFGIARMFTQQESVSNTNRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLLEIVSGRRNNSFYDDDHPSNLIGHAWELWNDGLCLQLLDASLNESFEHDEVQRCIHVGLLCVEQSANDRPTMSDIITMLTNKSAIVSLPQRPAFYVGGEIFDEKSSSKELCTTSTIEVTTSMKVESN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01720 183 Pfam Protein tyrosine and serine/threonine kinase 3 135 IPR001245 GO:0004672|GO:0006468
Cca04g01720 183 ProSiteProfiles Protein kinase domain profile. 1 150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01720 183 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 175 - -
Cca04g01720 183 Gene3D Transferase(Phosphotransferase) domain 1 1 144 - -
Cca04g01720 183 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 175 - -
Cca04g01720 183 SUPERFAMILY Protein kinase-like (PK-like) 1 152 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01720 Cca-Chr4 29494320 29495038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01720 1 151 Receptor kinase-like Gene Family AT3G45860 56.863 1.27e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01720 PK_Tyr_Ser-Thr 1.4e-16 CL0016