Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01717 ATGACCCTCCTTCAGGTCTTATTAATGTTTCCATATTTGAAGTATGCTATCAAGCTTAAGCAAGAGAAACTGGTTGCTTTCATGCACTTGTGGTTGTGGTGGAGTACTTGTTTTCATGTTAAAGCAAACAACAGTTTAAGACCTGGTGACACACTGAATTACACAGAAACAGGAAAAGTAATTACCAAAAACGGAAAATATTTTCTGGCTTTTTATACTATTGTTGATGACACTTACTTGGCTGTCTGGAAAACAAATTGGGACACTTATTGGGTTTGGTTGAGTGATAGAAACCAACCTGTTGACCCAGATTCTGCAGTTTTATCACTAAACCACTCTGGTGTGCTGAAAATAGAATCTCAACGTGGGAAACCAATAATCCTCTATTCTCCACCTCAACCAATCAACAACACTGTGGCAACCTTGTTGGACACAGGCAACTTTGTGCTTCAACAACTTCACCCCAATGGGTCTACAATGAGTGTGTTATGGCAGAGTTTTGATTATCCTATCGATACTATGATCCCTACCATGAAGTTAGGTGTTAATCATAAAACAGGCCATAATTGGTCACTTGTTTCATATTTTGCTAATGATGATATTAATATTGTAACACCAGGTGCCTTTAGCCTTGAATGGGAACCCGTTGGGGAAGAACTGGTCATAAGGAGACGCGGAAAAGTTAGTTGGCGAAGTGGGAAACTGAGGAACAATAGATTTGAGCACATTTCAGAAGATGCACAACGCACGTTGAACTACACCGTTGTTTCTAATGCTGATGAAAGTTCCTTCTCTTTCACAACTACAAATGATGATGTTGATGTTTTATGGTGGATCGCATCAGATGGGCAATTAAATAATTATAGCGAAACTGTTGTTTGGGCTGATATGTGTTATGGATATAACACTGATGAAGGGTGCCAAAGATGGGAGGATATACCTGAGTGTAGGAGTCGTGGTGATGTGTATCAGAGAAAGACGGGTCACCTCAATTTTGAATATGCAATCAGTGAACCAAATATGAGCTATGGCCTGAGTGATTGCCAGGCCATGTGCTGGAGCAATTGTAGTTGCACTGGTTACAAAGAACACAATCATAATGGTACTGGATGTACATTCTTTTCATCAGGACCTTATTATACTCTTAGTGATGTTGGTGAAAGATTTTACATGCTGGGGAACGTAACACAACAGATTGACAAGTCGACTGCAAAGTCAGAACCTCCTGGTACAAAAAAGTTTATATGGATAAGTGCATTAATAGCAACTATTCTACTCATAATATGCCTATTCAGTGTCTGCCTAATCTTGAAAAAACGAAAATATATGTTTCAAGATAAGAAAAAGAAAGGAATGGTGACCAAGATGTTGCATTTAGCAACTTGTAAAGGAACATCTAGCCGGAAAGAATTTGAAGATGATTTAAAACATGGACTCGAGTTAAAAGCATTTACTTATATATCAATAATGGAAGCTACAGATGGGTTTTCATCTGAAAATAAGTTGGGACAAGGAGGCTTTGGACCTGTATATAAGGGAATTTTTTCAACGGGACAAGAGGTTGCTATAAAAAGACTTTCAAAATCTTCTACACAGGGAATTGTGGAGTTCAAAAATGAACTTAAACTTATATGTGAACTTCAACATATGAATCTTGTACAACTACTTGGTTATTGCATTCATGAAGAAGAGAGGATTCTACTTTATGAGTATATGCCAAACAAAAGCTTGGATTTCTTTATATTCGATTGTACTAGAAGAAAATTACTAGATTGGAAGAAGCGCTTCAACATAATAGAAGGAATTGCTCAAGGATTACTTTATCTTCATAAGTATTCAAGACTTAAAGTCATTCACAGAGACCTGAAAGCTAGTAACATACTTCTTGATGAAAATTGGAACCCCAAAATTTCAGATTTTGGAATGGCAAGAATCTTCACACAACAAGAACCTGTAGAAAACACCAACAGGGTTGTTGGGACATATGGTTACATGTCACCAGAATATGCCATGGAAGGAATTTTCTCTACAAAGTCTGATGTCTATAGTTTTGGAGTGTTACTGCTTGAAATTATTAGTGGAAGAAGAAACACTAGCTTTTATGATGATGACCACCCATTAAATCTAATAGGACATGCATGGGAGTTATGGAATGTAGGTGAACCTCTACAATTAGTGGATCAATCACTAAATGAGTCGTTTGAACCTGATGAAGTGCAAAGATGCATTCATGTTGGTCTTTTGTGCGTTGAACAATACACAAATGATCGACCTACAATGTTTGACATTCTATCCATGTTGACAAACAAAAGTGCTATAGTTTCCTTACCTCAAAGACCAGCATTCTATGTTAAAAGAGAGATCTCTAATAGGTCATTATCTTCTAAAGAGTTGCTTACTGATTCTACATTTGAAATTACTACCTCTGGGAAAATGGAATCAAGgttaagaacctatctagcaaactag 2469 0.3674 MTLLQVLLMFPYLKYAIKLKQEKLVAFMHLWLWWSTCFHVKANNSLRPGDTLNYTETGKVITKNGKYFLAFYTIVDDTYLAVWKTNWDTYWVWLSDRNQPVDPDSAVLSLNHSGVLKIESQRGKPIILYSPPQPINNTVATLLDTGNFVLQQLHPNGSTMSVLWQSFDYPIDTMIPTMKLGVNHKTGHNWSLVSYFANDDINIVTPGAFSLEWEPVGEELVIRRRGKVSWRSGKLRNNRFEHISEDAQRTLNYTVVSNADESSFSFTTTNDDVDVLWWIASDGQLNNYSETVVWADMCYGYNTDEGCQRWEDIPECRSRGDVYQRKTGHLNFEYAISEPNMSYGLSDCQAMCWSNCSCTGYKEHNHNGTGCTFFSSGPYYTLSDVGERFYMLGNVTQQIDKSTAKSEPPGTKKFIWISALIATILLIICLFSVCLILKKRKYMFQDKKKKGMVTKMLHLATCKGTSSRKEFEDDLKHGLELKAFTYISIMEATDGFSSENKLGQGGFGPVYKGIFSTGQEVAIKRLSKSSTQGIVEFKNELKLICELQHMNLVQLLGYCIHEEERILLYEYMPNKSLDFFIFDCTRRKLLDWKKRFNIIEGIAQGLLYLHKYSRLKVIHRDLKASNILLDENWNPKISDFGMARIFTQQEPVENTNRVVGTYGYMSPEYAMEGIFSTKSDVYSFGVLLLEIISGRRNTSFYDDDHPLNLIGHAWELWNVGEPLQLVDQSLNESFEPDEVQRCIHVGLLCVEQYTNDRPTMFDILSMLTNKSAIVSLPQRPAFYVKREISNRSLSSKELLTDSTFEITTSGKMESRLRTYLAN 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01717 822 Pfam PAN-like domain 340 373 IPR003609 -
Cca04g01717 822 ProSiteProfiles Bulb-type lectin domain profile. 43 163 IPR001480 -
Cca04g01717 822 CDD STKc_IRAK 502 769 - -
Cca04g01717 822 ProSiteProfiles Protein kinase domain profile. 496 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01717 822 Gene3D Phosphorylase Kinase; domain 1 458 571 - -
Cca04g01717 822 Pfam D-mannose binding lectin 92 194 IPR001480 -
Cca04g01717 822 Pfam Protein tyrosine and serine/threonine kinase 499 765 IPR001245 GO:0004672|GO:0006468
Cca04g01717 822 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Cca04g01717 822 SUPERFAMILY alpha-D-mannose-specific plant lectins 90 192 IPR036426 -
Cca04g01717 822 SUPERFAMILY Protein kinase-like (PK-like) 480 788 IPR011009 -
Cca04g01717 822 SMART blect_4 52 170 IPR001480 -
Cca04g01717 822 Gene3D Transferase(Phosphotransferase) domain 1 572 777 - -
Cca04g01717 822 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 809 - -
Cca04g01717 822 Gene3D - 37 167 IPR036426 -
Cca04g01717 822 PIRSF SRK 18 301 IPR024171 GO:0004674
Cca04g01717 822 PIRSF SRK 295 815 IPR024171 GO:0004674
Cca04g01717 822 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 23 809 - -
Cca04g01717 822 SMART serkin_6 496 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01717 Cca-Chr4 29270502 29279753 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01717 463 785 Receptor kinase-like Gene Family AT4G05200 53.870 2.80e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01717 PK_Tyr_Ser-Thr 3.1e-47 CL0016