Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01714 ATGGCTTTCAGTATACAAGGGAAACCTCATGTACATGTGTTGCTTGTTCTAACGTACTTGTGGTTGTGGTGGACTACTTGTATTGAAGCCGCTAATGATAGTTTAAAGCCAGGTGATACGCTGAATACACCAGAAAAGTTATGTTCAGAAAAGGGTAAATATTGCATGAATTTTCAAGCAAAATTTGATGATGAGAGCGTAGCTTACTTACGTATATATACCCAAGAAAATGATGATTGGGTAGTGTGGGTTGCTAATAGAAACCAACCCGTTCTCACAGAATCTGCAGTTCTATCATTCAACCACTCTGGTGTACTTAAAATCGAATCCCAAGAGGTGGAACCAATTATCCTTTTCTCCACACCTCAAACACTCAACATCAACAACACTGTAGCCACCTTGTTGGACACAGGTAATTTTGTGCTTCAACAACTTCACCCTAACGGGTCCACAATGAGTGTGTTGTGGGAAAGTTTTGATTTTCCCACTGACACATTGCTCCCAGGGATGAAGCTAGGTGTGAACCACAAAACTGGTCGAAATTTGTCACTGGTTTCATGGTTGAGCAAAAATGTGGTTACTCCTGGTCCTTTCAGGCTTGAATGGGATAGTACAAAACAGTTGATGATCAAGCGAGGAGAAAGGGTTTATTGGACTAGTGGAAAAAGATTGGAGCACATTTCTGGGGAGGTTAATTATGATATTGTGTCAAATGAAAATGAAGCCTACTTCATATTGAGAAGTTCAAACTCAAAGGAAGAGATTACGAAATGGACGCTATTGTCAACGGGGCAGTTGATAAACCGTAATGGAGATGATGTTGCTAGGGCTGATATGTGTTATGGGTACAACACAGATGGAGGGTGCCAAAGGTGGGAGGAGATACCCACTTGCAGGCATCGTGGTGATGTGTTTGAACTGAAGCAAGGTTACCCTAATTTGAAGATGAAAAGAGATGAAGGGAATTCAAGTTATGGCATAAGTGAGTGCCAGACAATATGCTGGAGGAACTGCAGCTGCGTTGGGTTCACTCTTTTGCATGATAATGAAACTGGCTGCACATTCTTCCTGTGGGATTCATTGAAGGGTACCAATTTTGCAAGCGAGGGTGACAAGTTTTACATGCTAGTCAGGAGCAATCATCAAAAAGGGATAAAATGGTGGATATGGGTCATTATCGCAATAGCAACAACGACACTCATAATCTGCCTTTGCATTCTGTGCAGAGTCTTAAAGAAACGAAAACATGTGCTTGAAGAGAATAAAAGAAAAAGAATGGAGATTGAGAAGCAAGGACTTGCGCCTTCCAATAGATCCTCGAGTACCAAAAAACTAGAAGTTGATTTACAGGAGGAATATGACTTGAAAGTATTCAGTTATGCATCAATAATGGAGGCTACAAATGGCTTTTCATCTATAAACAAGTTAGGACAGGGTGGCTTTGGACTAGTTTACAAGGGAATTCTATCTACAAGGCAAGAAGTTGCTGTGAAAAAACTGTCAATATCTTCTGGACAAGGGCTAGTCGAATTTAAAAATGAATTAACACTCATATCTAAACTCCAGCACACGAATTTGGTTCAGCTACTCGGTTACTGCATTCATGAAGAAGAGAGGATTTTGATCTATGAGTACATGCCTAACAAAAGCTTGGACTTCATTTTATTTGATTCTACTCAAAGTCAGTTGCTGGATTGGAATAAGCGTTTCAGCATAATAGAAGGAATTGCTCAAGGATTACTTTACCTTCACAAATACTCGAGACTTAGAATCATTCATAGAGACTTGAAGGCCAGCAACATTCTCCTTGATGAGAACATGAACCCTAAAATTTCTGATTTTGGTATAGCAAAAATGTTCACACAGCAGAATTCTGAAGCAAATACCAACAGGATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCTATGGAAGGAGTTTTCTCCACAAAATCTGATGTGTACAGCTTTGGAGTGTTACTTTTTGAAATTGTTAGTGGTAAAAGAAACAATAGCATCTATACCGACGAACAACCACTCAATTTAGTAGGACATGCATGGGAGTTATGGAGAGAAGGAGAGGCTACTAAGTTGGTGGATCCAACACTAAACGATTCATTTTCTGAAGATGAAGTGTTAAGATGTGTTCATGCTGGTCTATTATGTGTGGAAGAAAATGCAGATGATCGACCCTCCATGTCCAACATTGTATCTATGTTAGCAAACAAAAGTAAAGTGACTTCTTTACCCAAAAAACCAGCGTATTATGTTAGAAAAAAAGTCTTGGGGGATGAAACGTCTACTAAAGAATTTGGTGCAGATTTCATACACGAAAATTCCCTTTCTTATGTATGTTAA 2361 0.3931 MAFSIQGKPHVHVLLVLTYLWLWWTTCIEAANDSLKPGDTLNTPEKLCSEKGKYCMNFQAKFDDESVAYLRIYTQENDDWVVWVANRNQPVLTESAVLSFNHSGVLKIESQEVEPIILFSTPQTLNINNTVATLLDTGNFVLQQLHPNGSTMSVLWESFDFPTDTLLPGMKLGVNHKTGRNLSLVSWLSKNVVTPGPFRLEWDSTKQLMIKRGERVYWTSGKRLEHISGEVNYDIVSNENEAYFILRSSNSKEEITKWTLLSTGQLINRNGDDVARADMCYGYNTDGGCQRWEEIPTCRHRGDVFELKQGYPNLKMKRDEGNSSYGISECQTICWRNCSCVGFTLLHDNETGCTFFLWDSLKGTNFASEGDKFYMLVRSNHQKGIKWWIWVIIAIATTTLIICLCILCRVLKKRKHVLEENKRKRMEIEKQGLAPSNRSSSTKKLEVDLQEEYDLKVFSYASIMEATNGFSSINKLGQGGFGLVYKGILSTRQEVAVKKLSISSGQGLVEFKNELTLISKLQHTNLVQLLGYCIHEEERILIYEYMPNKSLDFILFDSTQSQLLDWNKRFSIIEGIAQGLLYLHKYSRLRIIHRDLKASNILLDENMNPKISDFGIAKMFTQQNSEANTNRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLFEIVSGKRNNSIYTDEQPLNLVGHAWELWREGEATKLVDPTLNDSFSEDEVLRCVHAGLLCVEENADDRPSMSNIVSMLANKSKVTSLPKKPAYYVRKKVLGDETSTKEFGADFIHENSLSYVC 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01714 786 Gene3D - 26 159 IPR036426 -
Cca04g01714 786 ProSiteProfiles PAN/Apple domain profile. 298 379 IPR003609 -
Cca04g01714 786 CDD STKc_IRAK 476 741 - -
Cca04g01714 786 SMART serkin_6 470 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01714 786 SMART blect_4 32 162 IPR001480 -
Cca04g01714 786 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 189 IPR036426 -
Cca04g01714 786 Gene3D Phosphorylase Kinase; domain 1 430 545 - -
Cca04g01714 786 ProSiteProfiles Protein kinase domain profile. 470 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01714 786 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 13 784 - -
Cca04g01714 786 SUPERFAMILY Protein kinase-like (PK-like) 453 757 IPR011009 -
Cca04g01714 786 Gene3D Transferase(Phosphotransferase) domain 1 546 756 - -
Cca04g01714 786 ProSiteProfiles Bulb-type lectin domain profile. 32 155 IPR001480 -
Cca04g01714 786 ProSitePatterns Serine/Threonine protein kinases active-site signature. 591 603 IPR008271 GO:0004672|GO:0006468
Cca04g01714 786 PIRSF SRK 272 783 IPR024171 GO:0004674
Cca04g01714 786 PIRSF SRK 6 277 IPR024171 GO:0004674
Cca04g01714 786 Pfam Protein tyrosine and serine/threonine kinase 473 740 IPR001245 GO:0004672|GO:0006468
Cca04g01714 786 ProSitePatterns Protein kinases ATP-binding region signature. 476 499 IPR017441 GO:0005524
Cca04g01714 786 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 784 - -
Cca04g01714 786 Pfam D-mannose binding lectin 81 187 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01714 Cca-Chr4 28892457 28896899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01714 380 763 Receptor kinase-like Gene Family AT4G23190 49.096 1.25e-121 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01714 PK_Tyr_Ser-Thr 3.2e-49 CL0016