Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01713 ATGATGGAACAGTCAAGGTTATATAAACAGCTTCAGTACAATACCATGGAACCTAGAAATGAGGAGTTCCAGTCTGGATCTCAATCAGTAATTCAGGACCATATGGATGGCATGCATGCTATTAGAAGACCGTCTGACTATAACACATCAGATGTTAAACCAGTACTTAATTATTCAATACAGACAGGTGAGGAATTTGCTCTTGAATTTATGCGAGATAGGGTGAATCTCAGGAAGCCCGTATTTTCAAATGTTGGTGATTCCAATTCCAATTATGCAACTGGTAGCGTGGAACTGAAAGGTGTCTTAGGCATCAGTCATGCAGCTTCTGAAACTAGGTCAGACATTTCTATGCTCTCAAAAGTTGAGAAAGGTACAACAGAGTTTAACAGACAGAGTACATCATTACATAGAGACAGAAGCAATTATGGGTCTATTCGATCAATACCAAGAAGTTCATTGAATCAGGAGAATAGTCGATTTGTACGTGGGTATGGCTCTTCTTTTGGTTCAGACAGCTCATCAATTATGATGAAGTGTCTCTGTAGCTTTGGTGGCAAAATATTACCTCGACCGAGTGATGGAAAGCTAAGGTATGTTGGAGGTCAAACTCGTATTCTTCGTCTAAGGAAGGACATATCTTGGCAGGAGCTTATGCAAAAAGCATTGTTGATCTATAATCTGGTTCATGTACTAAAATATCAACTTCCTGGTGAAGATCTTGATGCTTTGGTATCAGTATCTTCTGATGAGGATTTGCAGAATATGATGGAAGAATGTAATCTTCTAGAAAATAGAGAACGCTCACAAAAGCTTAGGTTGTTTTTGTTCTCAATGAGTGATTTGGAAGATGCTCAGTTTGCTCTCAGTAGCATTGGTGATGACTCTGATGTCCAATATGTTGTTGCTGTTAATGGCATGGACTTTGGATCGATAAACAGCTCAACCCCACTTGGTGTCAGCTTTTCAACAGATGATTTACATGAATTGGAAAGGCAAACTATTGAGAGGGAGACTAATAGAGTTGCTGTAGAATCTATAGGTATCAGCAATGCTCCCTTGACTAACAAATCTGATGCTTCATTGACTATTCATTCTTCACAAACAGTTCTACCAAATTTGTCAAATGCTTATGAAATCGATCAGCAGTCTTATGGTGACCAAATGATGCAAGTTGCGGATTATAGTCATCAATATTTTGTTCACCATGGCCTGAGTTCCACTCATAACCCTGGGGTCGGAGGGACTCCTATTCCTATGGCACCTCATCTGCTAAACAATCAGCAAGGGTTTCTGAATGAAGACCATCTACCTAGTGGATTACAAATACAAAATTCCCAGTTACCTACAATGCAGGTGAGAAAGATAGACGACAGTTCAGTTAATCAAGGGAGTGATCCTGGTAAAGTTTTATCCTCTGAAACCGCATCCGCAGCTCCCTTACAGCCTTTTGACAGTTGCTTGAAAAGTAATTTTCCTGAAGCAGCGGTTGTAGTTACCATGCCTGAGGGGCATCTTCCTACGTTGCCTTCAACTAAAAAGGTTCAGAACAAGGATTGTGAAGAGGCCTCTTCTACTTCTAGCAGTGCATTTGTTCCTGCTTATGTTGATTCCCAAGCAAATGCAATTGATTTGAGTTCTCTGCATCCTCCTCCACTTCCTGAAAGAATTTACTATTCAGAAAGAACTCCAAGGGAGCAAGTAGAGTTGCTGAATCGTTCCTCAAAGTCAGATGACACACACAGTTCTCAAATTCATGTGTCAGATTTACTTTCTGATGTCACACCAGAGGATCCAGTGACAGAATCTAGTGATAACTTGCATGATGGTAAAATGTTAACACCAACTGTGGAATTGGGTACTTCTGCAAAGCCCTTGCTTGCAAATAGCCATACCATTGACAATGGGTTTTCGAAAAATCAAATGAGCAAACCGTTGCCTGATACAAACAGTCTGATTAAGTCAAAACTATCTGAGCACACAGATCCTGAGTTGAAGCCAGTGTTGCCAAGCAATGAAGGAACTATAGATGTGGAAACTGAGAATTGTCGTAAGGATAACTACACCAAGCCCTTGGTTGATGAAACTGAAACCAAAACCAAAACCAAAGATGGTAAATCGGATCTTCCTTCTTTGCACCATGTTTCCTCTGCTAAGCGTCTTGATGATCTAGCATCCAATCTTCCAGAGATTGATTGGGGTGAAGCCTCAGGGAAGGAATCTAATGATGGTTGTATGGTACAAGAACTACCTGTTACTGTAACTGGGAATGTAACCAAAGATCTTTATCAAGATTTCCCCTCAAATGTTGTTTCCAAACAATCTCAAGGTGACATTCTTATTGATATTGATGATCGATTTCCCCGGGAATTGCTTTCTGATATATTTTCTAAAGCAATACTTGGAGAAGACCCCTCCAGTCTACATCCACCGTCCGGAGAAGGAGTAGGCTTAAGCATAAATATGGAGAATCATGAACCTAAAAGATGGTCATATTTTCATAAGTTAGCACAAGGTCTTGATAATGTCTCTCTTATTGACCAGGATCATCTTGCTTTTTCACCCGTGATAGAAAAAGCAGGAGATAATAGAACTCATCATGTTACACCACTAACAGCTGATGGAGTTCCACAACATCATGAAGATTCTCATCTCAATTTCAGTGAAGAAAATCAAGAGGACTTGCATAGTAGGATTGAGACCGAAACTACTGTACTGAAGTCCAATTTTAATCAATCCCAACTGAAGGATGAGGAGAGTATGCAGTTTGATGTAATGATGGAAAATCTAAGAACACAAGAGTCAGAGTTTGAGGATGGCAAATTTGATGCAAAAAATAGCAATCTACCTGCACTTGATCCTTCTTTCGGAGATATTGATATTAGTACTGTGCAGGTCATTAAGAATGAAGATCTTGAAGAGTTGCGAGAACTAGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGAGGAACAGATGTTGCTATAAAAAGAATAAAGAAGAGCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACGGTAGAGTTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCACCCAAATGTTGTTGCATTTTATGGTGTGGTACAACATGGACCAGGAGGAACAATGGCCACTGTGGCAGAATACATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAACATTGTGCATTTCGACTTAAAATGTGACAATTTGCTTGTAAACTTGAAAGATCCTTTACGTCCAATATGCAAGGTTGGCGATTTTGGTTTATCCAAAATTAAACGAAATACCTTAGTTACTGGTGGTGTGAGGGGGACTCTGCCTTGGATGGCACCAGAGCTGCTAAATGGCAGCAGCAACAAGGTCTCTGAAAAGGTTGATGTGTTCTCCTTTGGAATAGTATTATGGGAAATCCTGACTGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATTATAGGTGGGATTGTAAATAACACATTAAGGCCAACCATACCAAGTAACTGTGATCCTGAATGGAGAACACTAATGGAACAATGTTGGGCACCCAATCCTGCAGCCAGACCATCATTCACAGAAATTGCCAGTCGTTTGCGCATAATGTCTGCAGCAGCTAGCCAAACCAAAACACAGGGCCATAAGCCATCTAAATGA 3765 0.4058 MMEQSRLYKQLQYNTMEPRNEEFQSGSQSVIQDHMDGMHAIRRPSDYNTSDVKPVLNYSIQTGEEFALEFMRDRVNLRKPVFSNVGDSNSNYATGSVELKGVLGISHAASETRSDISMLSKVEKGTTEFNRQSTSLHRDRSNYGSIRSIPRSSLNQENSRFVRGYGSSFGSDSSSIMMKCLCSFGGKILPRPSDGKLRYVGGQTRILRLRKDISWQELMQKALLIYNLVHVLKYQLPGEDLDALVSVSSDEDLQNMMEECNLLENRERSQKLRLFLFSMSDLEDAQFALSSIGDDSDVQYVVAVNGMDFGSINSSTPLGVSFSTDDLHELERQTIERETNRVAVESIGISNAPLTNKSDASLTIHSSQTVLPNLSNAYEIDQQSYGDQMMQVADYSHQYFVHHGLSSTHNPGVGGTPIPMAPHLLNNQQGFLNEDHLPSGLQIQNSQLPTMQVRKIDDSSVNQGSDPGKVLSSETASAAPLQPFDSCLKSNFPEAAVVVTMPEGHLPTLPSTKKVQNKDCEEASSTSSSAFVPAYVDSQANAIDLSSLHPPPLPERIYYSERTPREQVELLNRSSKSDDTHSSQIHVSDLLSDVTPEDPVTESSDNLHDGKMLTPTVELGTSAKPLLANSHTIDNGFSKNQMSKPLPDTNSLIKSKLSEHTDPELKPVLPSNEGTIDVETENCRKDNYTKPLVDETETKTKTKDGKSDLPSLHHVSSAKRLDDLASNLPEIDWGEASGKESNDGCMVQELPVTVTGNVTKDLYQDFPSNVVSKQSQGDILIDIDDRFPRELLSDIFSKAILGEDPSSLHPPSGEGVGLSINMENHEPKRWSYFHKLAQGLDNVSLIDQDHLAFSPVIEKAGDNRTHHVTPLTADGVPQHHEDSHLNFSEENQEDLHSRIETETTVLKSNFNQSQLKDEESMQFDVMMENLRTQESEFEDGKFDAKNSNLPALDPSFGDIDISTVQVIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQHGPGGTMATVAEYMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSNCDPEWRTLMEQCWAPNPAARPSFTEIASRLRIMSAAASQTKTQGHKPSK 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01713 1254 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1097 1109 IPR008271 GO:0004672|GO:0006468
Cca04g01713 1254 Pfam Protein tyrosine and serine/threonine kinase 973 1235 IPR001245 GO:0004672|GO:0006468
Cca04g01713 1254 Gene3D - 196 279 - -
Cca04g01713 1254 PRINTS Tyrosine kinase catalytic domain signature 1054 1067 IPR001245 GO:0004672|GO:0006468
Cca04g01713 1254 PRINTS Tyrosine kinase catalytic domain signature 1091 1109 IPR001245 GO:0004672|GO:0006468
Cca04g01713 1254 PRINTS Tyrosine kinase catalytic domain signature 1162 1184 IPR001245 GO:0004672|GO:0006468
Cca04g01713 1254 PRINTS Tyrosine kinase catalytic domain signature 1206 1228 IPR001245 GO:0004672|GO:0006468
Cca04g01713 1254 Pfam PB1 domain 194 277 IPR000270 GO:0005515
Cca04g01713 1254 Gene3D Phosphorylase Kinase; domain 1 965 1059 - -
Cca04g01713 1254 MobiDBLite consensus disorder prediction 569 611 - -
Cca04g01713 1254 Gene3D Transferase(Phosphotransferase) domain 1 1060 1254 - -
Cca04g01713 1254 SUPERFAMILY CAD & PB1 domains 193 281 - -
Cca04g01713 1254 CDD STKc_MAP3K-like 978 1235 - -
Cca04g01713 1254 PANTHER - 97 1254 - -
Cca04g01713 1254 Coils Coil 253 273 - -
Cca04g01713 1254 ProSitePatterns Protein kinases ATP-binding region signature. 978 1003 IPR017441 GO:0005524
Cca04g01713 1254 CDD PB1_UP2 181 277 - -
Cca04g01713 1254 SMART serkin_6 972 1238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01713 1254 MobiDBLite consensus disorder prediction 569 583 - -
Cca04g01713 1254 SUPERFAMILY Protein kinase-like (PK-like) 962 1235 IPR011009 -
Cca04g01713 1254 PANTHER SERINE-THREONINE PROTEIN KINASE 97 1254 - -
Cca04g01713 1254 SMART PB1_new 192 279 IPR000270 GO:0005515
Cca04g01713 1254 ProSiteProfiles Protein kinase domain profile. 972 1237 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01713 Cca-Chr4 28853719 28864289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01713 2 618 MAP Kinase Kinase Kinase AT1G16270 36.217 1.37e-84 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Cca04g01713 PK_Tyr_Ser-Thr 1.4e-62 CL0016