Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01711 ATGGAAGGCATAAACAGGTGGCTATCTTTCTATGTGAATGAAAGTGTTAACCATGATTTTGCCATTCGAAGGTACTGCCCTGCAAGAATGGAGCAAGAGCAAGGAGGAGAGTGCCAAGATCAAGAGGCATTAGTTTTCTATGACACTGAACTATGTTCTTCTGATGCAACCAGCAGCACTCCTTGTTTGGCTTCATCAGAGGTTGATGACTTCGTTGATAGCTTCATCAACATGGATCAGTACGGATACGAGAATGAAGGTCAAGGAGAGAAGCATCAAAGTTTTGATCTGGCAAAAGATGATGCTGATGCTGATGCATACTCCATGGTGAATGGTGTCTTTGGATATGTTCCAACCACCATGGAGGATTCAGAGTTAGAGATCTATGAAGATCTCACAACAACCATTTTGGAGGAAAAAGTTCAAATGTGTGGCCCTTTTGGTACTACTATACCTGAGTTTGTGCCTTGTGCAGCACAGGCTAGCCTTGACGTGGACCAAGGACTAGATTTGGTTCACGCGCTACTAGCCTGTGCTGAAGCTGTGGGGTGCAGAGACAACCAGCAGGCAGAGTTTCTGCTAAGTAGAGTTTGGGGTTTGGCAAGCCCTCAAGGAGACTCGTTGCAGCGAGTCTCCTACTACTTTGCAACAGGGTTGAAGTGTAGATTATCATCAGTTCTTCCTCACAATGTCATTGCAAACGGTGCTGCTATGGATGTGCCTTTGATCACAAGGGAGAATAAGCTGGAAGCTTTTCAGCTTCTTTACCAAAACACACCTTACATTGCCTTTGGCTTCATGGCTGCAAATGAAGCCATATGCCAAGCATCACAAGGAAAGTGCTCAATACACATTGTTGACTTAGCAATGGAGCATACCCTTCAGTGGTCTTCCCTAATAAGGGCACTAGCTTCAAGGACTGAGGGCCCTCCAACACTCCGGATCACCGGATTGACCAGCAATGAAGACAGTCCAAAGCTTCAATCTAGCATGAATGTGCTTGTGGAAGAAGCAACCTCATTAGGAATGCATCTTGAATTCCACATGATTTCTGAGCCTGCATCTCCATCTCTTCTTACTATGGAGAATCTGAACTTGAGAAAAGGTGAAGCTTTATTTGTCAACAGCATCTTGCAGTTGCACAAATATGTCAAAGAAAGTAGAGGCTACCTCAAGGAAATTCTCCTATCAATAAAGAGGTTAGGTCCAACTGCACTCACAGTTGTAGAGCAAGACACAAACCATAATGGCCCTTTTTTCCTTGGGAGATTCTTGGAATCACTGCACTATTACTCAGCAATATTTGATTCTCTTGAGGCAAGCATGCTAAGAAATAGCCAACACAGGATGAAAATAGAGAGATTGCACTTTGCAGAGGAAATTCGTAACATTGTAGCATATGAGGGTCCAGATAGAACAGAAAGACATGAAAGGGTGGACCAATGGAGAAGGCAATTAGGCCGAGCAGGGTTTCAGGTAATGCCACTCAAGTGCACAAGTCAAGCTAGAATGATGCTTTCTGTTTATGACTGTGATGGATATACTTTGTCTAGTGAGAAGGGAAACCTTCTACTTGGGTGGAAAGGAAGGCCAGTGATGATGGCTTCTGCATGGCAAGTTCCAAGTCTGTGA 1632 0.4418 MEGINRWLSFYVNESVNHDFAIRRYCPARMEQEQGGECQDQEALVFYDTELCSSDATSSTPCLASSEVDDFVDSFINMDQYGYENEGQGEKHQSFDLAKDDADADAYSMVNGVFGYVPTTMEDSELEIYEDLTTTILEEKVQMCGPFGTTIPEFVPCAAQASLDVDQGLDLVHALLACAEAVGCRDNQQAEFLLSRVWGLASPQGDSLQRVSYYFATGLKCRLSSVLPHNVIANGAAMDVPLITRENKLEAFQLLYQNTPYIAFGFMAANEAICQASQGKCSIHIVDLAMEHTLQWSSLIRALASRTEGPPTLRITGLTSNEDSPKLQSSMNVLVEEATSLGMHLEFHMISEPASPSLLTMENLNLRKGEALFVNSILQLHKYVKESRGYLKEILLSIKRLGPTALTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEASMLRNSQHRMKIERLHFAEEIRNIVAYEGPDRTERHERVDQWRRQLGRAGFQVMPLKCTSQARMMLSVYDCDGYTLSSEKGNLLLGWKGRPVMMASAWQVPSL 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01711 543 Pfam GRAS domain family 171 539 IPR005202 -
Cca04g01711 543 ProSiteProfiles GRAS family profile. 162 539 IPR005202 -
Cca04g01711 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 541 IPR005202 -
Cca04g01711 543 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 3 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01711 Cca-Chr4 28837246 28839091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01711 166 540 GRAS Transcription Factor Family AT1G66350 39.578 3.97e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca04g01711 GRAS 2.5e-107 CL0063