Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01707 ATGTCGGTGCTGATCGTGACGAGCTTGGGGGACCTTGTCGTCGATTTGCACACCAACAAATGCCCCTTGACCTGCAAAAATTTCTTGAAGCTTTGCAAGATAAAGTACTACAATGGTTGTCTATTTCACACTGTTCAGAAGGATTTTACTGCCCAAACTGGTGATCCAAGTGGCACGGGAACTGGTGGTGATTCTGTTTACAAGTTTCTATATGGTGATCAAGCCCGGTTTTTCAGCAATGAAATTCATATTGATCTGAAGCATTCCAAGACTGGAACTGTTGCCATGGCAAGTGCTGGAGAGAATCTGAATGCTTCACAGTTTTATATCACTCTGCGTGATGACCTCGATTACCTTGATGGAAAGCACACAGTTTTTGGTGAGGTAGCTGAAGGATTTGAGACTCTAACTAGAATAAATGAGGCTTATGTAGATGAGAAGGGAAGACCATATAAAAATATAAGAATCAAGCACACATATATCCTGGAGGATCCTTACGATGATCCTTCTCAGCTATCTGAGTTCATTCCTGAAGCTTCTCCGGAAGGAAAACCAAAAGATGAGGTCGATGATGAAGTGCGACTTGAAGATGATTGGGTGCCCATGGATGAACAATTAAACCCAGCAGAACTCGAGGAGGTTATTAGATCAAAGGAAGCACATTCTAGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATTAAGCCCCCGGACAATGTATTATTTGTCTGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACAATATTTTCACGCTTTGGAACTGTATCATCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGACAAACTTTCATGCGAGCAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATTCATGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGACACAATACAGGCGGAAAGATCAAAAGGGTAAAGGTGGTGGTTGCTTCAAATGTGGTTCTACAGATCATATAGCTAAGGATTGCACGGGAGATGCTACAATGAAACAACCACAAGCAAAATACATCTTAAAGGATGATAATACCCAACGTGGTGGAGATAATGCGAGTTATGAAATGGTTTTTGATGGAGATAACGTGGAAAGTCCAAGGCGAGATGTAAAACACCAAAGGCATGACAGGGACGACCCAGTTGAAAGAATAGGTAGGAAGGAAAATTTTAAAGATCATAGAAGTCGTAGGGATCAGGAAATGGTAGACTCAAACAGAGATAGGTATGGTCATAGAAGCAGAGGGCATGGGGGAAATGGGGACGACAAAGCACGATCAGAAAGAGCTGCAAGAGATGCCAGGGATTTTGATTCCCTTGCTGACAAGAAAGACAGAGATAGGCATATAGGAAGACAGAGAGATGATGATTACAAGCGGAAAGATGAGCGGGACTCAAGAAAAAGAGACGAAGACAATAGCTACAAGCGAAAAGATGAGCGAGATTCAAGAAAAAGAGACGAAGATGATAGCTACAGAGAAAGAAGAGGTAGCCGAGATGATAGGAGAAACACAGATTCTAGCCATTTGGAAAGAAGGAATGATAGAGATTACAGAAAGAGACCTGAAGACAGTGGTAAGCAAGATGCGAAGATTGATTCCGGACGAAGAAAAAGAAGTCCGGGTGCTGAGGATTACAAAAATGGAAGGGAGGATGAGGATTGCAGACCCATAAGGGAAGAACGTAGGCATAAAAGACAAGACATTGAAGCTGATGAGGATTACAAGCGCAGACGAGAAGACACAGATTACAAACGTAGAAGGGAGGATGGAGATTACAGACATAGAAGGGAAGAACGTGGACATAAAAGACAAGATATTGAAGCTGATGATCATCCTCATAGGAGGCATCATGGTGACAGGAGATGA 1953 0.4229 MSVLIVTSLGDLVVDLHTNKCPLTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPSGTGTGGDSVYKFLYGDQARFFSNEIHIDLKHSKTGTVAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDEKGRPYKNIRIKHTYILEDPYDDPSQLSEFIPEASPEGKPKDEVDDEVRLEDDWVPMDEQLNPAELEEVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVSSAEIIRDHKTGDSLCYAFIEFEDKLSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWTQYRRKDQKGKGGGCFKCGSTDHIAKDCTGDATMKQPQAKYILKDDNTQRGGDNASYEMVFDGDNVESPRRDVKHQRHDRDDPVERIGRKENFKDHRSRRDQEMVDSNRDRYGHRSRGHGGNGDDKARSERAARDARDFDSLADKKDRDRHIGRQRDDDYKRKDERDSRKRDEDNSYKRKDERDSRKRDEDDSYRERRGSRDDRRNTDSSHLERRNDRDYRKRPEDSGKQDAKIDSGRRKRSPGAEDYKNGREDEDCRPIREERRHKRQDIEADEDYKRRREDTDYKRRREDGDYRHRREERGHKRQDIEADDHPHRRHHGDRR 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01707 650 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Cca04g01707 650 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Cca04g01707 650 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Cca04g01707 650 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Cca04g01707 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Cca04g01707 650 SMART rrm1_1 244 317 IPR000504 GO:0003723
Cca04g01707 650 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Cca04g01707 650 MobiDBLite consensus disorder prediction 369 650 - -
Cca04g01707 650 Gene3D - 1 173 IPR029000 -
Cca04g01707 650 Gene3D - 324 376 - -
Cca04g01707 650 MobiDBLite consensus disorder prediction 390 650 - -
Cca04g01707 650 CDD cyclophilin_RRM 4 169 IPR035538 -
Cca04g01707 650 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Cca04g01707 650 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Cca04g01707 650 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Cca04g01707 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Cca04g01707 650 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Cca04g01707 650 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 517 IPR035542 -
Cca04g01707 650 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Cca04g01707 650 SUPERFAMILY RNA-binding domain, RBD 229 339 IPR035979 GO:0003676
Cca04g01707 650 Gene3D - 178 323 IPR012677 -
Cca04g01707 650 CDD RRM_PPIL4 240 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01707 Cca-Chr4 28606844 28625873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01707 7 166 U-box Gene Family AT5G67530 40.000 6.87e-31 126