Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01705 ATGAAACTCACCATTCCACACAACCCCAACCCTCTTCTACTTTCTTCATCGCCACTCTCTCAAAACCCTAACGTTTTCGCGTTAACCGCACCGCGCGGCGGCAGGAAGCTCAGGTTTCGAGTCTCGGCCACGGCGGAGCCCGATGGCCCCTCGTGGTCGCAGTCGCTGCGGCGCGGTTCGCGGCGGTTTTGGGTGAAGTTTGGGGAAATGGTGAAGAGGGAGACGGGTCTCGACTTCGAAGGTGGCGGCGTGAGGAACGTTGGCGAGGTGGCGAGCGGAGATGAATTGCGAACGTTTGGGACTCAGTTGGTATCTCAGTTTGTCGATTGGAATCGGTGGGAACAGTGGAAGAATATCAAGGACTGGGAACCTAAGCGAATTGGTGCATTGGTTCTTTACATTTTTGTTGTGGCATTTGCTTGTAGAGGAGTTTATGCCGCAATTCGAGCACCTTTCATAAATCGTAATAAGAAAGAATTGACAGAAGCTTACATGGAAGCGTTAATTCCAGAGCCATCCCCTACTAACATTAGAAGATTTAAGAAGGGTATGTGGAAGAACACAATTCCAAAAGGCCTAAAAATGAAAAAGCTTATTGAAAGACCTGATGGAACGCTTGTTCATGATACTTCTTATGTTGGAGAGGATGCATGGGAGGATGATCAAGAGGCTCCTGAGGAGCGTGTAAAACAAATTATAGAGGGTGATGAAAGGTTAAACAAAGAAGACAGAAAAGAACTATCAATAGGCTTGGGCATTTCAGCAGGTGAAGTTCAAAGTGAAGCTACATGGCGTGAGAGACTTCATAAATGGAGGAAGATCCTTAGAAAAGAACGTTTTTCTGAGCAATTGGATTCCTTAAATGCCAAATATGTAGTTGAATTTGACATGAAAGAGGTTGAAAATAGTCTTCGCAAGGATGTGGCAGAAAAGGTGACAGGCACTCAGGGTACTAGGGCTCTGTGGATAGCTAAGAGATGGTGGCACTATCGCCCTAAACTTCCTTACACTTATTTCCTTGACAAACTTGATAGTTCTGAGGTAGCAGCCATTGTCTTTACCGAAGACTTGAAAAGATTGTATGTGACAATGAAAGAAGGTTTTCCATTGGAATTTGTTGTGGATATCCCTCTCGATCCTTATCTGTTTGAGATTATTACAAGTTCTGGAGTTGAAGTAGATCTGCTTCAGAAGCGACAGATCCATTATTTCATGAAGGTTGTGCTTGCATTAGTACCTGGAATACTTATTCTCTGGCTTATTAGGGAGTCTGTTATGCTTCTACACATTACTTCCAAGCGGTTCCTTTACAAGAAGTATAATCAACTCTTTGATATGGCTCATGCAGAAAATTTCATTCTGCCAGTTGGAGATGTTGGTGAAACGAAATCAATGTACAAGGAAGTTGTGTTGGGGGGTGATGTTTGGGATCTTCTTGATGAGTTGATGATATATATGGGAAATCCTATGCAGTTCTATGAAAGGGACGTGCAGTTTGTTCGGGGTGTTCTACTCTCTGGACCTCCAGGAACAGGAAAAACACTTTTTGCCAGGACACTTGCAAAAGAAAGTGGTTTACCTTTTGTATTTGCTTCGGGTGCTGAGTTCACAGATAGTGAAAAAAGTGGAGCAGCTAGAATCAATGAGATGTTTTCCATTGCTAGGAGAAATGCACCTTGTTTTGTATTTGTGGATGAAATAGATGCTATTGCTGGAAGACACGCTAGGAAGGATCCACGAAGAAGGGCAACTTTTGAGGCTCTTATTGCACAGCTTGATGGGGAGAAGGAAAAAACTGGTGTTGATCGTCTATCCCTCAGACAAGCTATCATATTCATCTGTGCCACAAATAGGCCAGATGAATTAGATCTTGAGTTTGTTCGTGCTGGACGTATTGATCGTCGTCTGTACATTGGTTTGCCTGATGCAAAGCAGAGAGTCCAAATTTTTGGTGTGCACAGTTCCGGTAAGCAGCTTGCAGAGGATGTGAATTTTGAAGAGCTTGTCTTCCGCACTGTTGGGTTCTCTGGAGCAGATATAAGAAACCTTGTCAACGAAGCAGCAATAATGTCG 2073 0.4385 MKLTIPHNPNPLLLSSSPLSQNPNVFALTAPRGGRKLRFRVSATAEPDGPSWSQSLRRGSRRFWVKFGEMVKRETGLDFEGGGVRNVGEVASGDELRTFGTQLVSQFVDWNRWEQWKNIKDWEPKRIGALVLYIFVVAFACRGVYAAIRAPFINRNKKELTEAYMEALIPEPSPTNIRRFKKGMWKNTIPKGLKMKKLIERPDGTLVHDTSYVGEDAWEDDQEAPEERVKQIIEGDERLNKEDRKELSIGLGISAGEVQSEATWRERLHKWRKILRKERFSEQLDSLNAKYVVEFDMKEVENSLRKDVAEKVTGTQGTRALWIAKRWWHYRPKLPYTYFLDKLDSSEVAAIVFTEDLKRLYVTMKEGFPLEFVVDIPLDPYLFEIITSSGVEVDLLQKRQIHYFMKVVLALVPGILILWLIRESVMLLHITSKRFLYKKYNQLFDMAHAENFILPVGDVGETKSMYKEVVLGGDVWDLLDELMIYMGNPMQFYERDVQFVRGVLLSGPPGTGKTLFARTLAKESGLPFVFASGAEFTDSEKSGAARINEMFSIARRNAPCFVFVDEIDAIAGRHARKDPRRRATFEALIAQLDGEKEKTGVDRLSLRQAIIFICATNRPDELDLEFVRAGRIDRRLYIGLPDAKQRVQIFGVHSSGKQLAEDVNFEELVFRTVGFSGADIRNLVNEAAIMS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01705 691 SMART AAA_5 499 642 IPR003593 -
Cca04g01705 691 PANTHER ATP-DEPENDENT PROTEASE 35 691 - -
Cca04g01705 691 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 12, CHLOROPLASTIC 35 691 - -
Cca04g01705 691 CDD AAA 501 640 - -
Cca04g01705 691 Pfam ATPase family associated with various cellular activities (AAA) 503 639 IPR003959 GO:0005524|GO:0016887
Cca04g01705 691 Gene3D - 642 691 - -
Cca04g01705 691 Pfam AAA+ lid domain 662 689 IPR041569 -
Cca04g01705 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 690 IPR027417 -
Cca04g01705 691 Gene3D - 460 641 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01705 Cca-Chr4 28508794 28539647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01705 466 689 Miscellaneous Gene Families AT5G53170 37.333 4.48e-42 162