Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01696 ATGGATTGTGCAGCTGCAAGAAAGTCGCAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTTAATGAACAGTTTGTAGAACTGGGTAACGTTTTAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAGTTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTCAAAGATGAATATGCTACGCTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGGGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATATTTCCATGGGCTGCAATGGATCATTCTGTTATGATGGCTCCACCATCATATCCGTTTCCAGTGCCAATGGCAGTACCTCCTGGTACAATTCCCATGCAGCCATTCCCCTTCTTTGCTAATCAACATCCTGCAGTCATCTCAAACCCCTGTTCAACTTTTGTTCCTTATATAGCCCCCAATACCCTTGTTGAACAACAATCCACCCAGTATGTATCCCCTCCACTTCATCCAGGTGGTCGGTCCAATGTTTCAGGAAAACAAGAGTCCAAGAGCAAATCATCCAGGGAGAGCAAGGCTGAAAAAAATGAGGATTCCAATGATGTCACTACGGACCTAGAGTTGAAGACTCCTGGATCATCTGCAGATCAGGATTTATCATCTGGACAAAGAAAATCCAGCAAGTTGTCAAGGAGGGAAAACAGCTGTACAGAAGGGAGTTCATTAGGCAGATGCTCTTCTTCCCGTAGTGTTCAGGATAGCTCATCAAGCAGTGTAGTGGCTAGCAGAAAGGATAATGAATGA 849 0.4346 MDCAAARKSQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILGDTIQLLKDLTSQVSKLKDEYATLNEESRELTQEKNDLREEKASLKSDIENLNNQYQQQLRTIFPWAAMDHSVMMAPPSYPFPVPMAVPPGTIPMQPFPFFANQHPAVISNPCSTFVPYIAPNTLVEQQSTQYVSPPLHPGGRSNVSGKQESKSKSSRESKAEKNEDSNDVTTDLELKTPGSSADQDLSSGQRKSSKLSRRENSCTEGSSLGRCSSSRSVQDSSSSSVVASRKDNE 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01696 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 - -
Cca04g01696 282 Coils Coil 5 25 - -
Cca04g01696 282 MobiDBLite consensus disorder prediction 198 219 - -
Cca04g01696 282 Gene3D - 4 89 IPR036638 GO:0046983
Cca04g01696 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 76 IPR036638 GO:0046983
Cca04g01696 282 MobiDBLite consensus disorder prediction 248 282 - -
Cca04g01696 282 Pfam Helix-loop-helix DNA-binding domain 7 56 IPR011598 GO:0046983
Cca04g01696 282 MobiDBLite consensus disorder prediction 220 239 - -
Cca04g01696 282 MobiDBLite consensus disorder prediction 176 282 - -
Cca04g01696 282 CDD bHLH_AtILR3_like 11 85 - -
Cca04g01696 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 56 IPR011598 GO:0046983
Cca04g01696 282 PANTHER TRANSCRIPTION FACTOR BHLH121 1 280 IPR044579 GO:0003700|GO:0055072
Cca04g01696 282 SMART finulus 12 62 IPR011598 GO:0046983
Cca04g01696 282 Coils Coil 46 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01696 Cca-Chr4 28211500 28216908 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01696 4 246 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 63.855 3.28e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca04g01696 HLH 1.5e-08 No_clan