Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01688 ATGTCGGAGAGTGGTGGCGAACACGGCGGCGCCACCGCCAGAAGGGAAGAGATCCTGGCGGAGAAGGCCTCCGGAGAGTCGTCATCATTGTCATGGAGACTCAATGTGAAGAAGTTTCAGTTGCCACGCCAAAGTCATAACCATGATCATGATCATTGTCACCATGCTCGTTCCTTCACTTTCCGTGGCCTTCTTCGGGAACCTAAGAAGCAACGTAAGGTTGCAGAATACTACAAGAAACAGGAGAGGCTCCTTGAAGGGTATAATGACATGGATACTATGACAGAAACGGGTTATTTTCCGGGAAGTCTCACTGAGGATGAGCTGAAGCAGTTAGCAAGAAGTGAGAGGTTGGCAGTTAATGTGTCAAATGCAGCTAACTTTTTGCTGTTTGCAGCAAAGGTTTATACATCAATTGAAAGTCGATCATTAGCAGTCATTGCTTCCACCATGGATTCTCTCTTAGATCTCTTGTCAGGGTTCATATTATGGTTCACTGCCTATGCCATGAGAAACCCAAACCATTATCACTACCCCATTGGAAAGAAACGGATGCAACCAGTGGGTATCATTGTTTTTGCATCAGTGATGGCAACCTTGGGATTACAAATTTTGATTGAGTCAGCTCGACAACTAATTTCTAAGTCTAAGGCTAAAATGGATCCCCATGAGTTGGAATGGATGATCGGGATTATGTTATCTGTTACTATAGTGAAGTTCATTCTCATGATCTATTGTCGAAGGTTTAAGAATGAGATTGTTAGAGCTTATGCACAAGATCATTTTTTCGATGTTATTACTAATTCAGTTGGATTAGTTGCTGCTGTGCTTGCTGTCAAATACTCTTGGTGGATTGATCCAATGGGAGCTATTATTATAGCACTATACACTATTAATACATGGGCAAAAACAGTGATTGAGAATGTATGGTCCCTTATAGGAAGGACAGCTCCACCTGATTTTCTAGCAAAGTTGACATATTTGATATGGAATCACCATGAAGAGGTTAAGCACATAGATACAGTGAGAGCATACACCTTTGGTGCTTATTACTTTGTTGAAGCAGATATTGTGCTGCCAGAAGACATGCCTCTCAATCAAGCACACAACATTGGTGAGACACTACAAGAGAAATTGGAACAACTTCCTGAAGTTGAAAGAGCCTTCGTGCACATTGATTTTGAGTATACTCATAGGCCTGAACATAAGACAATGGTGTAA 1221 0.4185 MSESGGEHGGATARREEILAEKASGESSSLSWRLNVKKFQLPRQSHNHDHDHCHHARSFTFRGLLREPKKQRKVAEYYKKQERLLEGYNDMDTMTETGYFPGSLTEDELKQLARSERLAVNVSNAANFLLFAAKVYTSIESRSLAVIASTMDSLLDLLSGFILWFTAYAMRNPNHYHYPIGKKRMQPVGIIVFASVMATLGLQILIESARQLISKSKAKMDPHELEWMIGIMLSVTIVKFILMIYCRRFKNEIVRAYAQDHFFDVITNSVGLVAAVLAVKYSWWIDPMGAIIIALYTINTWAKTVIENVWSLIGRTAPPDFLAKLTYLIWNHHEEVKHIDTVRAYTFGAYYFVEADIVLPEDMPLNQAHNIGETLQEKLEQLPEVERAFVHIDFEYTHRPEHKTMV 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01688 406 PANTHER MITOCHONDRIAL METAL TRANSPORTER 1-RELATED 20 406 - -
Cca04g01688 406 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 317 393 IPR036837 -
Cca04g01688 406 Pfam Dimerisation domain of Zinc Transporter 319 393 IPR027470 -
Cca04g01688 406 TIGRFAM CDF: cation diffusion facilitator family transporter 121 393 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cca04g01688 406 Pfam Cation efflux family 123 312 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Cca04g01688 406 Gene3D Cation efflux protein transmembrane domain 118 312 IPR027469 -
Cca04g01688 406 Gene3D Cation efflux protein, cytoplasmic domain 317 394 IPR036837 -
Cca04g01688 406 SUPERFAMILY Cation efflux protein transmembrane domain-like 115 314 IPR027469 -
Cca04g01688 406 PANTHER METAL TOLERANCE PROTEIN 9 20 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01688 Cca-Chr4 27896191 27903063 Transposed