Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01680 AACGGTACACTACAAATTACACTGAATCTCTCTTTTCTCTTAGTTTCTGCGTCGAAACTCGAAGCCCTTAACCGAATCCAAACCAATACCTCAATGGTTTCTCTCACGGGAAAATCTAGAGTGGGTTCAACTCGAGCCTCTGTTGGTGGGACTCAATCTCGCCCAACTGTGGGCGGTAGGAATTTCAAAGTGTTTTCGGAAATTGACCGGACTAAAGTTGGTGATGTGAATATGACATCTGCAAGAGGAGCAGGTGCAACTTCAAGAAGAAATACTGTGGTAGCTAACAAAGGGGTCATTCTTAATAGCACCAGTAATCTAAAGGGTGGTCTCAAAAAAAGTATGAATAAAAGTAGTGACAAAGGTGGCACTTCTGTAACAAATGCAAATGTGAGAAAGGCATTGGTTGATGTTAGCAATGTTCAAAAAAACTTCACTACAGCTGTTGGGCATGTGGGCTCCATAAAGAAGGTTTCAGCAGGTTCAAGCACCAAAATAGTGGGCGTATCTTTGAGGAAATCCTTCACGGGAAGAGTTCAAAGAAATACAAGTAAAGTTGATGTTCAGTTAGATGCTCTCAATAAAGGCAATAGAGATAATCATCAGAAGAATAATACAAATGGAGGCCAATCAGTTGTTGCCACAAAGGACAGGTTTACGAGGAAGCCTATATTTCCTACAACTACAAGGAAGTCTTTACCAGTACCAAGGAGGGTAAGCAGGGAAGATACAAGTAACACAAAGGAAAATGTAAGAAGTTCTCAAACAGCAAAAGGCCAAAGTGATCTCCCCACTAAGGCAACAGCAAAAAGAAGAGATAGTTCCCAACTAATCAACGCAAGAAGCTATCTATGGAAGAATCGAGTTAGTGACGGTTTTGTTCAAATGGTTCAATCTAATGTTTTACATGCATCCTCAAGGAAGTCCACCAAGCCAATTGTTAAGATCACACTTAAGGCTTCCACTGCTCAAAGGACGTTAAAATCTAAACCCATATCTGCTCAGAACAAATTAGAATCAACTGCTTCAACATCATCTCAGAACAAGGAAACAGTTCCTTTGTCTCTTACTGAGAATGGTTCAACGATAGTTTCTGATGATGCAAACCAAAGTAATCAAAGTCATCTTCCATCTGGAGAAAGCAATTTGAGAACAGATACGTCAGACATTATTCCAAAGAACAAATCCAGACGACGGAAATCCTATACTACTTCATTAATTGAAGGATCTAAGTTTCTCAAGGAAAGTGGTCCCAAGGAAAGTGGTGAAGTTAGAGAGCTGAATAACCTACCAAATATAGATAATGAACGCAATCAACTTGAAGTTTCTGAATACATTGATGAGATATACCAGTACTACTGGGTTACTGAGGCACATAATCCGGTTCTAGCAAATTACATGTCAATTCAGACAGACATTACACCTCATTTGCGGGGCATTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGATTTGATGCCAGAAACACTGTATCTCACTGTTACTTTGTTGGATCAATATCTTTCCCAAGTGACTATCAAAAAGACTGTTATGCAGTTAGTTGGTCTTACAGCACTTTTGCTGGCTTCAAAGTACGAGGATTTTTGGCATCCTAGGGTCAAAGATTTAATTAGCATCTCAGCTGAGTCATATACTAGAGATCAAATGCTTGGAATGGAAAAGCTTATGCTTAGAAAATTAAAGTTCCGTCTTAATACTCCTACTCCTTATGTTTTTATGGTGAGGTTTCTCAAGGCTGCACAATCAGATAAAAAGCTTGAACACATGGCATTCTTTTTGATTGACCTATGCTTAGTTGAGTATGAAGCTTTAGCATTCAAGCCTTCATTACTTTGTGCATCAGCTCTCTATGTTGCACGTTGTACATTGCAAATGACTCCACCATGGACCCCACTACTTCATAAGCATGCGCGTTATGAAGTTTCACAACTCAGGGATTGTGCGGATATGATATTGAAGTTCCACAAAGCTTCTGGGAATGGAAAGTTGAAGGTTGCATACGAAAAGTACTCTAGACAGGAACTCAGTAGGGTTGCGGCAGTGAAACCATTGGATAAACTTCCCCTGTGA 2097 0.3968 NGTLQITLNLSFLLVSASKLEALNRIQTNTSMVSLTGKSRVGSTRASVGGTQSRPTVGGRNFKVFSEIDRTKVGDVNMTSARGAGATSRRNTVVANKGVILNSTSNLKGGLKKSMNKSSDKGGTSVTNANVRKALVDVSNVQKNFTTAVGHVGSIKKVSAGSSTKIVGVSLRKSFTGRVQRNTSKVDVQLDALNKGNRDNHQKNNTNGGQSVVATKDRFTRKPIFPTTTRKSLPVPRRVSREDTSNTKENVRSSQTAKGQSDLPTKATAKRRDSSQLINARSYLWKNRVSDGFVQMVQSNVLHASSRKSTKPIVKITLKASTAQRTLKSKPISAQNKLESTASTSSQNKETVPLSLTENGSTIVSDDANQSNQSHLPSGESNLRTDTSDIIPKNKSRRRKSYTTSLIEGSKFLKESGPKESGEVRELNNLPNIDNERNQLEVSEYIDEIYQYYWVTEAHNPVLANYMSIQTDITPHLRGILINWLIEVHFKFDLMPETLYLTVTLLDQYLSQVTIKKTVMQLVGLTALLLASKYEDFWHPRVKDLISISAESYTRDQMLGMEKLMLRKLKFRLNTPTPYVFMVRFLKAAQSDKKLEHMAFFLIDLCLVEYEALAFKPSLLCASALYVARCTLQMTPPWTPLLHKHARYEVSQLRDCADMILKFHKASGNGKLKVAYEKYSRQELSRVAAVKPLDKLPL 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01680 698 MobiDBLite consensus disorder prediction 199 214 - -
Cca04g01680 698 CDD CYCLIN 477 566 IPR013763 -
Cca04g01680 698 CDD CYCLIN 574 661 IPR013763 -
Cca04g01680 698 Pfam Cyclin, C-terminal domain 576 691 IPR004367 -
Cca04g01680 698 PANTHER CYCLIN-B3-1-RELATED 159 695 - -
Cca04g01680 698 SUPERFAMILY Cyclin-like 576 695 IPR036915 -
Cca04g01680 698 PANTHER CYCLINS 159 695 IPR039361 -
Cca04g01680 698 Gene3D - 569 697 - -
Cca04g01680 698 SMART cyclin_7 580 662 IPR013763 -
Cca04g01680 698 SMART cyclin_7 483 567 IPR013763 -
Cca04g01680 698 Pfam Cyclin, N-terminal domain 448 574 IPR006671 -
Cca04g01680 698 SUPERFAMILY Cyclin-like 438 574 IPR036915 -
Cca04g01680 698 MobiDBLite consensus disorder prediction 324 402 - -
Cca04g01680 698 MobiDBLite consensus disorder prediction 193 274 - -
Cca04g01680 698 MobiDBLite consensus disorder prediction 324 389 - -
Cca04g01680 698 Gene3D - 463 568 - -
Cca04g01680 698 MobiDBLite consensus disorder prediction 249 263 - -
Cca04g01680 698 SMART Cyclin_C_2 576 693 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01680 Cca-Chr4 27449672 27459361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01680 57 698 Core Cell Cycle Gene Families AT1G16330 46.677 4.16e-177 518