Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01677 ATGGCAACGTCTACCGCTGGATCCAGTGATCCATCAACCACCAGAAGACAAAGCAAGAAACCCAAGTACTCAAAGTTTACACAACAAGAACTTCCAGCGTGCAAGCCTATTCTCACACCAAGAGCAGTGATTTCAGCATTCTTGATTGTCACCATCGTGTTCGTTCCCATTGGAGTTGCTTCGTTAATTGCTTCACATGATGTTGTTGAAATAATTGATAGGTATGATGCAGAGTGTATACCTTCAAATGTGACAGACAAGGTGGCATACATTCAGACTCCAGGAGAAAAGCCATGCAAAAGAGAACTACATGTGGAGAAGCGCATGAAGTCTCCTATCTATGTTTACTACCAGCTTGACAACTTTTACCAGAATCATCGGCGGTATGTTAAAAGCCGAAATGATGATCAACTGAGGGATTCTGGAAAAGCAAACTCGGTGAGTGGTTGTGAGCCTGAAGATGATGCTAATGGAATGCCAATAGTGCCTTGTGGTCTTATTGCTTGGAGCTTGTTCAACGATACATACAGCTTCTCGCGCAACAGCAATAATTTGACAGTGAACAAGAAAGGCATTTCATGGAAGAGTGACAGGGAGCACAAATTTGGAAGTGATGTTTTTCCAAAAAATTTTCAGAATGGTTCTATAATAGGCGGTGGTCATCTTGATGTAAACATTCCATTGAGTGAGCAGGAGGATCTTATTGTTTGGATGCGAACTGCTGCTTTGCCAACTTTTAGGAAGTTGTATGGTAAGATTGAGGTAGATCTGGAGAAAGGCGATGTCATACAGGTGAATTTGGGAAATAACTACAACACATATAGTTTTAGTGGCAAGAAGAAGCTTGTTCTGTCGACCACTAGCTGGCTAGGTGGCAAGAATGACTTCCTTGGCATTGCGTATCTCACTGTTGGAGGATTGAGCTTCTTTTTGGTTCTGGCCTTTACCATCATTTATCTCATCAAGCCAAGGCAACTTGGAGATCCCTCTTATTTGTCATGGAATAGGAACCCTGGAGGGCACTGA 1026 0.4259 MATSTAGSSDPSTTRRQSKKPKYSKFTQQELPACKPILTPRAVISAFLIVTIVFVPIGVASLIASHDVVEIIDRYDAECIPSNVTDKVAYIQTPGEKPCKRELHVEKRMKSPIYVYYQLDNFYQNHRRYVKSRNDDQLRDSGKANSVSGCEPEDDANGMPIVPCGLIAWSLFNDTYSFSRNSNNLTVNKKGISWKSDREHKFGSDVFPKNFQNGSIIGGGHLDVNIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLEKGDVIQVNLGNNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLSFFLVLAFTIIYLIKPRQLGDPSYLSWNRNPGGH 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01677 341 Pfam LEM3 (ligand-effect modulator 3) family / CDC50 family 62 325 IPR005045 GO:0016020
Cca04g01677 341 PIRSF Lem3/Cdc50 2 337 IPR005045 GO:0016020
Cca04g01677 341 PANTHER CELL CYCLE CONTROL PROTEIN 50 3 340 IPR005045 GO:0016020
Cca04g01677 341 MobiDBLite consensus disorder prediction 1 26 - -
Cca04g01677 341 MobiDBLite consensus disorder prediction 133 154 - -
Cca04g01677 341 PANTHER ALA-INTERACTING SUBUNIT 3 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01677 Cca-Chr4 27308629 27314138 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01457 10 22356828 22364187 Cca04g01677 04 27308629 27314138 PCT