Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01672 ATGGAAAGAATGTTCCCTCCTAAAAAGCCTTCAACTATGAATTCCCATGACAGACCCATGTGTGTGCAAGGAGACTCAGGCCTTGTCCTCACCACAGACCCAAAGCCACGCCTCCGTTGGACTGTTGAACTTCATGAACGTTTTGTTGATGCTGTTGCTCAGCTTGGAGGACCTGATAAGGCCACTCCTAAAACAATCATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCACCTCAAGAGCCACCTTCAGAAATTCAGACTTGGAAAGCAACCCCACAAGGATTTCAATGAGCACTCGATTAAGGATGGCATGAGAGCTTCGGCTTTAGACCTTCAACGAAATATTGGTCCCTCTTCTGCTATGATTGGTCGCAACATGAACGAGATGCAAATGGAGGTGCAAAGAAGATTGCATGAACAACTAGAGGTTCAGAAAAACCTTCAGCTGAGGATTGAGGCTCAAGGGAAATACATGCAAAGTATATTGGAGAAGGCTTGTCACACACTTGCCGGAGAAAACATGGCCACAAACATGAAGGGTACCATTGGAGGTCCTCAAGGCACCCCTGATGTTGGGGTCATGAAAGAATTTTCTTCTCTCAATTTCCCTTCTTTTCAAGATCTAAACATTTATGGTAGTGGTGACCATCTTGATCAAGGGTTTATTCCAACTAATAATAGTGAAAGTTTGTTTGTGGGGAAGAAGAGGCCTTGCCCCTATAGTGGAAGTGGAAAGAGTCCTTTGATTTGGAATGATGATCTAAGGCTTCAAGATATGGGAACGGCTTCATCATGCATTAGCCCTCAAGATGACCCTTTCAAAGGTGATCATCACAAGGTTCAGATTTCACCACCATCAATGGATAGTGATCCCATGTCGGAGATCTATGACACAAAGCCAGTGGTACTCCATGGAGAAAGTATAGGGGATCAGAAGAAATTTGATGCACCTTTGAAGCTAGAAAGGCCATCGCCAAAAAGATCACCACTTCAATCAGAAAGGACGAGTCCTATGGTTAATGCAAGTTCCGTGGCACAAGGTAGAAGCTCCCCATTTGGTTGA 1068 0.4476 MERMFPPKKPSTMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNEHSIKDGMRASALDLQRNIGPSSAMIGRNMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKACHTLAGENMATNMKGTIGGPQGTPDVGVMKEFSSLNFPSFQDLNIYGSGDHLDQGFIPTNNSESLFVGKKRPCPYSGSGKSPLIWNDDLRLQDMGTASSCISPQDDPFKGDHHKVQISPPSMDSDPMSEIYDTKPVVLHGESIGDQKKFDAPLKLERPSPKRSPLQSERTSPMVNASSVAQGRSSPFG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01672 355 Gene3D - 34 92 - -
Cca04g01672 355 MobiDBLite consensus disorder prediction 1 20 - -
Cca04g01672 355 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Cca04g01672 355 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Cca04g01672 355 MobiDBLite consensus disorder prediction 308 330 - -
Cca04g01672 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Cca04g01672 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 303 - -
Cca04g01672 355 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Cca04g01672 355 MobiDBLite consensus disorder prediction 306 355 - -
Cca04g01672 355 Pfam MYB-CC type transfactor, LHEQLE motif 131 169 IPR025756 -
Cca04g01672 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 303 IPR044848 GO:0003700
Cca04g01672 355 MobiDBLite consensus disorder prediction 331 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01672 Cca-Chr4 27087629 27090510 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca04g01672 Myb_DNA-binding 4.8e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01466 10 22741193 22743766 Cca04g01672 04 27087629 27090510 PCT