Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01669 ATGTCTGTTTATGTGGTGGCATCATTGGACCTAAATTGGCATCTTGGGTTGCTTGGTTTTGGAGAAAATAAGGCAGAACCCATTTCTGAAGACAATAACACCAAAATTTGGCTTCAGAAATTCATATTGTGGCTACCAATTGTAATTTTTGGAATATGGTGGCTACTTCATCAATCAGAAGAGGAAAGAGAAAGCAATCTCAATGGCAATGAGGTTGATCATGAAGGAGAGGTTGATCAATTGGACCATTTTTTTAAGTCTCATCAGGGAGAGCAGGAGCACCTTAGTAGTGAATTGAACTATTATTTTGATGGCGGTGATCATCTCCCGGCCGCCGCGCCCAGTGACAGCGGTGGGAGGAGACACGGTGGTTGTGCCTCTTGTGGAAATTTAAGCACCACAAGGTGCTCTCGCTGCAAGGCTGCTAGATATTGCTCAATGGAATGCCAAATTATTCATTGGAGGTCAGGGCATAAATACGAATGTTCGGAATCAAAGAATATAGCAGATGAAGCAAGACCAACAACTCATGATCACGGAATCTCCAAACTTGTTGAGAACTCTGAAAAGGAGAGTGCCTCTAATGGGTCCAATGTTGATGATGGAGTGAAGTGGAGTTTAGAATCAGATGTGGGTGTGGAAGTTTCAAGTGAAAGTGATGTTAACAACATCCATGGTTGTGAAGTATGTGGTAGAACAAGTACCACAAGATGTTCACGATGCAAATCCGTCAAATACTGCTCAGTAAAGTGCTTGATTATGGACTGGAGATGGCACAAAGATCAGTGCATTGCCAGGGACGTGGATTCAACTCCAATAGAAAGAGCCCATAGAGATGTTGGATTGCTCAAGAGTTCATATGAAGAGGAAGAAAATATTCATTCGTCATCTGAAGGAACCTCAAGCTTCAAATCTCCAATTGAAGCATCACAGGATCCTATCAACAAAGTGTTATATCTCGAGGATGAAGCAGCAAGGTCTAGGAATGAAGCTTTATTACTACAGTCAGAACTTGAAGACTGGAAGAAGCGAGCAAATTTTGCTAAAGAAAGATGGCAAAGCCTCAAGAAAGAATCTAACCACCAGTTGCTTAAGTTGAAGAATGAAAGGGAATCAATATCAGATGCTGAAAAGAAAGCTTGCAGTGTGATTCGTAGTTTACATGAAAGGCTAAAGCATTTGCAGAAAGTAGTGCAAGAAAGCATTGTAGAGAAGACAAATCTTGAAGAACATATACAAAATTTAGAGCATGAATGTGCCAAGCTCAACAAAGAACTGCAAGAAGAGCATAAACGCTCTCAATTTCTTACAGTGGAATATGATAAAAGTCATGAGGCTGCACAAATAGCCAAGAGAGAAGTTGAAGCAGTAAGACAAGTGTTACAAGAAGAACGAGAAAATGCTCAACGAATTATGGAGAATTTTCGTAGGGATGTTATATTTGCTGAATCTAGAGCTGCCTTTGCTGAGGCAAAACTCAGTGATCTTCATAGGAAAATAAGAATTTCAGATTATAAGGTCTGTTCTATATGCCTCTGTAATGAAAAGGACTTGGCTTTTGGATGTGGGCACATGACTTGTAGAGAGTGTGGATTAAAATTATCAAAGTGTCATATATGCCGTGAGCAGATCACAAACCATATCAAGCTATTCCCTGGGTGA 1662 0.4043 MSVYVVASLDLNWHLGLLGFGENKAEPISEDNNTKIWLQKFILWLPIVIFGIWWLLHQSEEERESNLNGNEVDHEGEVDQLDHFFKSHQGEQEHLSSELNYYFDGGDHLPAAAPSDSGGRRHGGCASCGNLSTTRCSRCKAARYCSMECQIIHWRSGHKYECSESKNIADEARPTTHDHGISKLVENSEKESASNGSNVDDGVKWSLESDVGVEVSSESDVNNIHGCEVCGRTSTTRCSRCKSVKYCSVKCLIMDWRWHKDQCIARDVDSTPIERAHRDVGLLKSSYEEEENIHSSSEGTSSFKSPIEASQDPINKVLYLEDEAARSRNEALLLQSELEDWKKRANFAKERWQSLKKESNHQLLKLKNERESISDAEKKACSVIRSLHERLKHLQKVVQESIVEKTNLEEHIQNLEHECAKLNKELQEEHKRSQFLTVEYDKSHEAAQIAKREVEAVRQVLQEERENAQRIMENFRRDVIFAESRAAFAEAKLSDLHRKIRISDYKVCSICLCNEKDLAFGCGHMTCRECGLKLSKCHICREQITNHIKLFPG 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01669 553 Pfam MYND finger 227 263 IPR002893 -
Cca04g01669 553 Pfam MYND finger 125 162 IPR002893 -
Cca04g01669 553 ProSiteProfiles Zinc finger RING-type profile. 508 541 IPR001841 -
Cca04g01669 553 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 225 457 - -
Cca04g01669 553 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 17 119 202 - -
Cca04g01669 553 ProSiteProfiles Zinc finger MYND-type profile. 125 162 IPR002893 -
Cca04g01669 553 Gene3D - 214 267 - -
Cca04g01669 553 Gene3D - 114 168 - -
Cca04g01669 553 Coils Coil 444 485 - -
Cca04g01669 553 ProSiteProfiles Zinc finger MYND-type profile. 227 263 IPR002893 -
Cca04g01669 553 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 119 202 - -
Cca04g01669 553 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 225 457 - -
Cca04g01669 553 SUPERFAMILY HIT/MYND zinc finger-like 224 264 - -
Cca04g01669 553 MobiDBLite consensus disorder prediction 287 308 - -
Cca04g01669 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 492 552 IPR013083 -
Cca04g01669 553 Coils Coil 398 432 - -
Cca04g01669 553 Coils Coil 324 376 - -
Cca04g01669 553 SUPERFAMILY HIT/MYND zinc finger-like 122 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01669 Cca-Chr4 26655430 26665537 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01669 227 256 Miscellaneous Gene Families AT4G31670 63.333 8.52e-06 46.6