Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01650 ATGAATTACAATCTACAAGAGACTCTCAAGATGGATCATGCTTGTAGAAATTCAGAAAATAGTTTTGAAAGTCATGTCAAAGAGGTAAATCAAGCAATAAATAATGCCTCCACAGTTGACTACACAAACAATGGAGCAAGACAAATACACCAAACTTCTGAAAACAATTCAAACATGACAAGTGAACCAACATCTAAACCTCAGAAGTTAGAAAATCCTACTAGGAACATTTATGATTTTTCCACTACTCAACGCCCATGTCCAAGTGCAAGAATGCTTTCAAATTCTAACCCTTCAACCACCTCATTAGGAGTAATAACAGAAACTCCAAAAGTGTTTTCTTTACCTGCAAAAGAAACCAACCAAGGTCAAGGTAGTGGCACTAACTCTCGTAGTGATAGTTTAGAGAACATTAGTAGTGGACATATTAAGCCACATACTGGAGGTGATGTAAGGTGGGATGCAATTAACATGGTTTCCAAAGGTAATGCTCTTAATCTTAGCCATTTCACACTTCTAAAGCGTGTTGGGTATGGAGATATTGGAAGTGTGTACCTTGTGAGGCTTAAAGGAAGTAATGCATTCTTTGCCATGAAAGTAATGGATAAGGCATCACTTGCAAGTAGAAACAAGCTTTTTAGAGCACAAACAGAAAGAGAGATTCTTGGACTTCTCGACCACCCATTTTTGCCAACTTTATATTCTTATTTTGAAACTGATAAATACTATTGTTTGGTCATGGAGTTTTGCAGTAGTGGTAGCCTGCATTCTCTTCGATTGAAGCAATATAACAAGTATTTCACTGAAGACGCTGCACGGTTTTATTGTTCAGAGATTTTGTTAGCTTTGGAATACTTGCACATGCTAGGCATTGTGTATAGAGACTTAAAACCAGAGAATGTTCTGGTTCGAGATGAAGGTCACATAATGTTATCGGATTTTGACCTATCCCTTCGTTGCACTGTCAACCCTACACTTGTGAAGTCATCATCTGCACATGATCAACGTAGTAGTAGCAGTAATGGTCCATCTGGGGCCATTTTTCATGATGATCAAGTGGTGTACGGTTGCATACTGTCCTCAAGTTTCTTCCCACGCATTTTGCATCCAAAAAAGAATCGTAAGTCAAAGTCAGATTTTGGCCTCATGGTTGGAGGAAGCCTCCCAGAACTAATGGCAGAGCCTACAAATGTGAGGTCAATGTCCTTTGTAGGGACACACGAGTATCTTGCACCAGAGATTATCCGTGGTGAAGGACATGGTAGTGCAGTGGATTGGTGGACTTTTGGGATCTTCTTGTATGAGCTTTTGCATGGCATAACACCCTTTAAGGGCACAGGAAACAAAGCCACACTCTACAATGTTGTAGGGCAACCCTTAAGGTTCCCAGAAAAACCCCGTGTTAGTAATGTGGCAAGAGACCTTATAAAAGGGTTGTTGGTGAAAGAGCCTCAGAAAAGATTTGCTTATAAGAGAGGTGCCACGGAAATAAAACAACACCCTTTCTTTGATGGAGTGAATTGGGCTCTTATTAGAAGTGCTGCACCTCCTATTATACCAAAACCTTTCAACTATTCTAAATATGCTAGCAAAGAAAATGTGGCCCCAGTAGACAAAAAGATCGCAGATATTTATGCAAGTGATAAAAGTAGGCATACACAACCTGATTCTTCTCATGAAGATTTTGAGTATTTTTAG 1698 0.3946 MNYNLQETLKMDHACRNSENSFESHVKEVNQAINNASTVDYTNNGARQIHQTSENNSNMTSEPTSKPQKLENPTRNIYDFSTTQRPCPSARMLSNSNPSTTSLGVITETPKVFSLPAKETNQGQGSGTNSRSDSLENISSGHIKPHTGGDVRWDAINMVSKGNALNLSHFTLLKRVGYGDIGSVYLVRLKGSNAFFAMKVMDKASLASRNKLFRAQTEREILGLLDHPFLPTLYSYFETDKYYCLVMEFCSSGSLHSLRLKQYNKYFTEDAARFYCSEILLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCTVNPTLVKSSSAHDQRSSSSNGPSGAIFHDDQVVYGCILSSSFFPRILHPKKNRKSKSDFGLMVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGITPFKGTGNKATLYNVVGQPLRFPEKPRVSNVARDLIKGLLVKEPQKRFAYKRGATEIKQHPFFDGVNWALIRSAAPPIIPKPFNYSKYASKENVAPVDKKIADIYASDKSRHTQPDSSHEDFEYF 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01650 565 PANTHER SERINE/THREONINE-PROTEIN KINASE AGC1-5 21 565 - -
Cca04g01650 565 PANTHER FLIPPASE KINASE 1-RELATED 21 565 - -
Cca04g01650 565 CDD STKc_phototropin_like 168 522 - -
Cca04g01650 565 MobiDBLite consensus disorder prediction 52 141 - -
Cca04g01650 565 ProSiteProfiles Protein kinase domain profile. 170 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01650 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Cca04g01650 565 ProSiteProfiles AGC-kinase C-terminal domain profile. 504 565 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca04g01650 565 SUPERFAMILY Protein kinase-like (PK-like) 167 531 IPR011009 -
Cca04g01650 565 Pfam Protein kinase domain 171 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01650 565 Pfam Protein kinase domain 396 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01650 565 SMART serkin_6 170 503 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01650 565 MobiDBLite consensus disorder prediction 546 565 - -
Cca04g01650 565 Gene3D Transferase(Phosphotransferase) domain 1 250 319 - -
Cca04g01650 565 Gene3D Transferase(Phosphotransferase) domain 1 379 521 - -
Cca04g01650 565 Gene3D Phosphorylase Kinase; domain 1 168 249 - -
Cca04g01650 565 MobiDBLite consensus disorder prediction 52 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01650 Cca-Chr4 26037295 26041252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01650 49 538 AGC Kinase Gene Family AT1G79250 66.869 0.0 649
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca04g01650 Pkinase 5.5e-37 CL0016