Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01649 ATGGAAAACCACATCTACGCCTCCTCCTACAGCCCCTCCACCAACTACAGATTCCTCGACCCCGACGCCGCCATGTTCCTCTCccaccaccgccccgactccgccgccctccgcttcccctccgccgccctcgacgccgacattgctccgcccggcgtcacctcccgaatcgcctcctcggccgccgccgccgcctccctcctctcctcctGGCCCCCCGCCGAACTTAAACGCTCCTCCGACGCTCTGTACCATCCAACCATTTTGGGTACACTTGGGCAAAATGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATGTGACTATATATCCTCAGAGGCCAGGAGAGAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATATCGTTACAAGTGAAACTCCTCCCGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTCAAGACTCAAAGATGCAAGTTTGGTTCCAAGTGCAAATTTAATCATCCCAAAGTTTCCTCTGAAAATGCTGATGTTTCTTCTGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGCACCTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTGCTTGTAAATTCCATCACCCTAAGGATGTCCAGATTCAATTGTCTGATGAATCGAGTCATACTGTTGCACAGACACAAACAAATTCCTTGATGGGAGGAGCAATAGGAGATACACAGCCAATTAAATCTCTTATATCTCCATCATTGCAGAATAGCAAAGGGCTCCCAGTAAGACTGGGGGAAGTGGATTGTCCATTCTACATGAAAACTGGGAGTTGCAAGTATGGTGTCACTTGCCGCTACAATCATCCTGACAGGAATGCAATTAATCCATCCATTGCTGCATTAGGCCCTTCTATTTTGCCATCCTCGGCTGCTAATCTGAATATTGGAGTTCTTAATCCAGCTGTGTCTGTTTATCAAGCTTTTGACCCAAGGCTATCAAATCCAATGGTAATGTTGTTATTGTACTCGTTCTCATAG 1128 0.4016 MENHIYASSYSPSTNYRFLDPDAAMFLSHHRPDSAALRFPSAALDADIAPPGVTSRIASSAAAAASLLSSWPPAELKRSSDALYHPTILGTLGQNEAWYSTNSLAKRPRYESASNVTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVPNIVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPKVSSENADVSSGLPERPSEPPCTFYMKTGKCKFGAACKFHHPKDVQIQLSDESSHTVAQTQTNSLMGGAIGDTQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGVTCRYNHPDRNAINPSIAALGPSILPSSAANLNIGVLNPAVSVYQAFDPRLSNPMVMLLLYSFS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01649 375 Gene3D - 160 204 - -
Cca04g01649 375 Gene3D - 205 254 - -
Cca04g01649 375 Gene3D - 81 159 - -
Cca04g01649 375 Gene3D - 274 327 - -
Cca04g01649 375 ProSiteProfiles Zinc finger C3H1-type profile. 216 244 IPR000571 GO:0046872
Cca04g01649 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 219 243 IPR000571 GO:0046872
Cca04g01649 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 296 319 IPR000571 GO:0046872
Cca04g01649 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 148 IPR000571 GO:0046872
Cca04g01649 375 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 176 201 IPR000571 GO:0046872
Cca04g01649 375 PANTHER CCCH ZINC FINGER/TIS11-RELATED 75 359 IPR045877 GO:0003729
Cca04g01649 375 SUPERFAMILY CCCH zinc finger 297 320 IPR036855 GO:0046872
Cca04g01649 375 ProSiteProfiles Zinc finger C3H1-type profile. 174 202 IPR000571 GO:0046872
Cca04g01649 375 SUPERFAMILY CCCH zinc finger 220 244 IPR036855 GO:0046872
Cca04g01649 375 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 75 359 - -
Cca04g01649 375 SMART c3hfinal6 293 320 IPR000571 GO:0046872
Cca04g01649 375 SMART c3hfinal6 216 243 IPR000571 GO:0046872
Cca04g01649 375 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Cca04g01649 375 SMART c3hfinal6 174 201 IPR000571 GO:0046872
Cca04g01649 375 ProSiteProfiles Zinc finger C3H1-type profile. 293 321 IPR000571 GO:0046872
Cca04g01649 375 ProSiteProfiles Zinc finger C3H1-type profile. 122 150 IPR000571 GO:0046872
Cca04g01649 375 SUPERFAMILY CCCH zinc finger 122 149 IPR036855 GO:0046872
Cca04g01649 375 SUPERFAMILY CCCH zinc finger 179 200 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01649 Cca-Chr4 25994162 26001610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01649 172 370 C3H Transcription Factor Family AT1G04990 34.615 7.26e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca04g01649 zf-CCCH 2.4e-10 CL0537