Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01648 ATGAAGTACGTGTTGGTAACAGGTGGTGTTGTGAGTGGACTTGGGAAAGGAGTCACTGCAAGCAGTATTGGGGTGCTCCTTAAAGCCTGTGGCTTTCGGGTTACTTCTATCAAGATTGATCCCTACCTGAACACTGATGCAGGGACAATGTCTCCTTTTGAGCATGGGGAAGTGTTTGTTTTAGATGATGGCGGTGAGGTTGACCTTGATCTTGGAAACTATGAACGTTTCTTGGACCTCAAATTAACACGTGACAATAATATCACAACTGGAAAAATATATCAGTCTGTTATTGAAAAGGAGAGAAGAGGAGATTATCTTGGCAAGACTGTGCAGGTTGTTCCACACATTACTGATGCCATCCAAGAGTGGATAGAGCGTGTAGCACAGATACCAGTTGATGGAAAAGAAGGCCCAGCTGATGTTTGCGTCATTGAGTTGGGTGGAACTATTGGGGATATTGAGTCCATGCCTTTTATTGAAGCACTTGGCCAATTTTCGTACCGTGTAGGCCCTGGCAACTTCTGTTTAGTTCATGTCAGCCTGGTGCCTGTTCTCAATGTTGTTGGCGAACAGAAAACAAAGCCAACTCAACACAGTGTCCGCCAACTTAGAGGGTTAGGGTTGACTCCAAATCTTCTTGCTTGTCGTAGTTCAAAGCCTTGCATATATTCTCAAGAGAAACTTTTTCATCTGCAGTCATCAAGCATACTTACTCTCTATGATGTTCCAAATATTTGGCACATTCCTTTGCTGTTAAGAGACCAGAAGGCGCACGAGGCAATCCTGAAAACTTTAAACCTGCGAGGTGTTGCTGCAGAGCCTAATTTTAAGGATTGGATTGCAACAACAAAAGTATATGAAAAATTTCATGAATCAGTTAGAATTGCGATGGTGGGAAAATATACTAACCTTTCAGATGCATATCTTTCTGTATTGAAGGCACTGTTGCATGCTTCTGTTGCTTGCAACCACAAGCTTGTAGTGGACTGGGTTCCTGCTGAAAATCTTGAAGATGATACCTCTAAAGAGGATCCTGATGCGTATAAAGCTGCTTGGGGTCTTCTGAAGGGTGCTAATGGGATTCTAGTTCCAGGAGGTTTTGGTGACAGAGGAGTGAAAGGGAAAATTCTTGCTGCTAAGTATGCTCGAGAAAATAGTGTTCCATTTCTGGGCATTTGCTTAGGGATGCAAATTGCTGTCATTGAGTTTTCAAGATCTGTTCTGGGTCTTCATGATGCTAATAGCACAGAATTTGATCCAAAAACCAAAAACCCGTGTGTCATATTTATGCCTGAAGGTTCAAAGACACATATGGGGGGAACTATGCGTCTTGGTTCAAGGAGAACTTACTTCCACATTTCTGACTGCAAATCGGCCAAGTTGTATGGCAATGCAAGGTTTGTTGATGAGCGACATCGGCACCGATACGAGGTTAATCCTGACATGATATCACAACTCGAGAATGCTGGTCTATCTTTTGTTGGAAAAGATGAAACTGGGAGGCGCATGGAGATAATTGAATTGCCTGGTCATCCTTTCTACATTGGTGCTCAGTTTCATCCTGAGTTTAAGTCAAGACCAGGGAAACCTTCTCCATTATTCTTAGGATTAATAACAGCAGCATGTGAGAAGACAGTTGTGCCAAGCAAAGGGTATCCCAAGATAACAAATGCTGTAATTAGTGCACACTCGCCAATGTTGAAAGCACATAGTGGAAAAGGGTTCAAATCTTCCAATAGTTCCTTAAATGGTGTATATACAAGTACTGCTGCCAATGGGGTGTGTGTGGATGGTAGCTGTTAA 1806 0.4264 MKYVLVTGGVVSGLGKGVTASSIGVLLKACGFRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDLKLTRDNNITTGKIYQSVIEKERRGDYLGKTVQVVPHITDAIQEWIERVAQIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYRVGPGNFCLVHVSLVPVLNVVGEQKTKPTQHSVRQLRGLGLTPNLLACRSSKPCIYSQEKLFHLQSSSILTLYDVPNIWHIPLLLRDQKAHEAILKTLNLRGVAAEPNFKDWIATTKVYEKFHESVRIAMVGKYTNLSDAYLSVLKALLHASVACNHKLVVDWVPAENLEDDTSKEDPDAYKAAWGLLKGANGILVPGGFGDRGVKGKILAAKYARENSVPFLGICLGMQIAVIEFSRSVLGLHDANSTEFDPKTKNPCVIFMPEGSKTHMGGTMRLGSRRTYFHISDCKSAKLYGNARFVDERHRHRYEVNPDMISQLENAGLSFVGKDETGRRMEIIELPGHPFYIGAQFHPEFKSRPGKPSPLFLGLITAACEKTVVPSKGYPKITNAVISAHSPMLKAHSGKGFKSSNSSLNGVYTSTAANGVCVDGSC 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01648 601 CDD GATase1_CTP_Synthase 294 539 IPR033828 GO:0003883|GO:0006241
Cca04g01648 601 Gene3D - 1 288 IPR027417 -
Cca04g01648 601 PANTHER CTP SYNTHASE 1 563 IPR004468 GO:0003883|GO:0006221
Cca04g01648 601 TIGRFAM PyrG: CTP synthase 1 541 IPR004468 GO:0003883|GO:0006221
Cca04g01648 601 PANTHER CTP SYNTHASE 1 563 - -
Cca04g01648 601 CDD CTPS_N 2 264 IPR017456 GO:0003883|GO:0006221
Cca04g01648 601 SUPERFAMILY Class I glutamine amidotransferase-like 293 544 IPR029062 -
Cca04g01648 601 Pfam Glutamine amidotransferase class-I 305 540 IPR017926 -
Cca04g01648 601 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 295 548 - -
Cca04g01648 601 Gene3D - 290 551 IPR029062 -
Cca04g01648 601 Pfam CTP synthase N-terminus 2 268 IPR017456 GO:0003883|GO:0006221
Cca04g01648 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 268 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01648 Cca-Chr4 25930492 25938377 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01599 10 27152173 27167997 Cca04g01648 04 25930492 25938377 PCT
Cca04g01648 04 25930492 25938377 Cca10g01529 10 24970925 24977895 PCT