Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01646 ATGGGCGTGGTCGTGATCGACGGCACCACCGTGCGCGACTTCGTGCGGGACGAGGCGGCGTTCGCCAAGAGCGTGGACGAGCAGTTCGCGGCGCTCGACCTCAACAACGACGGCGTCCTCTCGCGGTCGGAGCTCCGCACGGCGTTCCAGTCCATGCGCCTCATCGAGTCGCACTTCGGCATCGACGTGGCCACGCCGCCGGAGCAGCTGGCCGCGCTCTACGACTCCATCTTCCAGAAGTTCGACGGCGACCGGAGCGGCGCCGTGGACCGCGGCGAGTTCCGGGAGGAGATGAAGAAGATCATGCTGGCCATCGCCGACGGCTTGGGGTCCTTCCCCATCCAGATGGTCCTCGAAGACGACCCCCACAGTCTCTTGCAGAAGGCCGCGGATCTAGAAGCTTCCAAGTCTTGA 414 0.657 MGVVVIDGTTVRDFVRDEAAFAKSVDEQFAALDLNNDGVLSRSELRTAFQSMRLIESHFGIDVATPPEQLAALYDSIFQKFDGDRSGAVDRGEFREEMKKIMLAIADGLGSFPIQMVLEDDPHSLLQKAADLEASKS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01646 137 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN 1 136 - -
Cca04g01646 137 PANTHER CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED 1 136 - -
Cca04g01646 137 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Cca04g01646 137 Gene3D - 8 106 - -
Cca04g01646 137 ProSiteProfiles EF-hand calcium-binding domain profile. 20 55 IPR002048 GO:0005509
Cca04g01646 137 ProSitePatterns EF-hand calcium-binding domain. 33 45 IPR018247 -
Cca04g01646 137 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
Cca04g01646 137 SUPERFAMILY EF-hand 23 103 IPR011992 -
Cca04g01646 137 SMART efh_1 73 101 IPR002048 GO:0005509
Cca04g01646 137 SMART efh_1 24 52 IPR002048 GO:0005509
Cca04g01646 137 Pfam EF-hand domain pair 27 99 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01646 Cca-Chr4 25809478 25811107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01646 1 136 EF-hand Containing Proteins AT2G44310 74.265 1.41e-69 204