Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01643 ATGTCATTTACCCTTGGCCAGAAATTTTTCAAGAGGTTCTGTGTGGATGAATTCCATATGGGAAGTCTTCCATATAGCAGCTTTTTGTCCAATGATCTCTTGCCATCCCTTGGAGCCAGAATCAACCAAGAAACAAGACTTAGAAGATACATAGTTTCCCCTTTCAATCCACGTTATAGGGCATGGGAGATGCTACTAATTGTCCTGGTTGTTTACTCTGCATGGATTTGCCCCTTTGAATTTGCCTTTCTGCCTTACAAGCAAGACACACTGTTCATCATTGACAACATTGTCAATTCCTTCTTTGCCATTGACATCATGCTCACATTCTTTGTAGCATATCTTGATAACCATTCCTACCTTCTTGTTGATCACCCCAAGAAAATTGCAATCAGGTACATATCTACCTGGTTTATCTTTGATGTCTGCTCAACTGCACCATTTCAATCTATCAGCCTCCTCTTCACTGATCACAGCAGTGAGATTGGCTTCAAAGTTCTCAACATGCTTCGGTTGTGGCGCTTGAGAAGAGTTAGTTCTCTGTTTGCAAGACTTGAGAAGGATATTCGCTTCAATTACTTCTGGACTAGGTGCTCCAAGCTCATTGCTGTAACTTTGTTTGCTGTGCACTGTGCTGGATGCTTCAACTATCTGATAGCAGATAGGTACCCAGATGCCAAGAGGACATGGATTGGTGCTGTGTACCCAAATTTCAAAGAATTGAGTCTTTGGGAAAGATATGTGACATCCATGTATTGGTCCATTGTGACACTTACCACCACTGGCTATGGGGATCTACATGCTGAAAACACAAGAGAGATGCTTTTTGACATCTTCTACATGCTCTTCAACTTGGGATTAACAGCATACATCATTGGCAACATGACTAATCTGGTTGTCCACTGGACTAGCCGCACCAGAAATTTTAGAGACACAGTGAGAGCAGCTTCAGAATTTGCATCAAGAAATCATCTGCCCCATCACATACAGGATCAAATGTTGTCACACTTGTGTTTGAAGTTCAAGACAGAAGGACTGAAGCAGCAAGAAACACTAAATGGCATGCCAAAGGCAATTCGTGCAAGCATTGCATACCATCTGTTTTTCTCTGTTGTGCAGAAGGTTTACATCTTCCAAGGAGTCTCAGATGACTTTCTTTTCCAACTGGTTACAGAGATGGAAGCTGAGTATTTCCCACCCAAGGAAGATGTTATACTACAAAATGAGTCTCCCACGGACCTTTACATGCTGGTTTCAGGGGCAGTGGATCTGATTCGCTATGTTGATGGCCATGATCAAATTCTGAAGAAGGCTACTGCAGGAGACACATTTGGGGAGATTGGGGTGTTATACTGTACACCACAGCCTTTCACTGTTCGGACCACTGAGCTTTCTCAAATTTTAAGACTCAGCAGAAGTTCATTGATGAATTCCTTACATGCGTATCCAGAAGCAGCACAAATTATAATGAAAAATATTTTTACGGTGTTGAAAGGGCATGAAGGATTGGATTTTGAATATCCACCTAGGGACCCTGGATTGGCTCTTTACCAAATGCATGATTGGGACAACACAAGAGGAAGTTTTTCTGATGCATCCAAAAATAATTCAGCCAGATTGCATTACTTGATTCCTGAGGATGGAAAAAGAGATCTTCATGCTACTTTGCCAAATGGTCATCCTGACATGGAAGAAAATGAAAAGAAGCTAAGCCCTATAAGATGGAAACAAAAACCTCTTGTAGGCCAGCATCAAAACAAGAGCATTTCTGACCTTGCAATGAATCATGAAAATAGGAAGACATTAGATGAACATATAATTGAGTTTTTGGAGCCAGAAATCCCTATCAACCACCCTTTAGGAAAACTGTATACTAACACTTATTCAAGTACCTCTAACCATAGAACTGAGAGAGAAACAGAAAGATTCTTCAAAAAGAGAGTTACTATCCACTTTCATGGCAAACACAAAACCACCATGCAGGAGCAGCATGGGAAGTTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCCATATTGCTGGAGAAAAGTTTGGAGTCTCCAAGCCTACAAAAGTAATTACCAGAGAGAATGCAGAGATAGATGATATTAGTGTCATTCGAGATGGTGATCATCTTTTTTTTTCTTTTTAG 2154 0.4085 MSFTLGQKFFKRFCVDEFHMGSLPYSSFLSNDLLPSLGARINQETRLRRYIVSPFNPRYRAWEMLLIVLVVYSAWICPFEFAFLPYKQDTLFIIDNIVNSFFAIDIMLTFFVAYLDNHSYLLVDHPKKIAIRYISTWFIFDVCSTAPFQSISLLFTDHSSEIGFKVLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCSKLIAVTLFAVHCAGCFNYLIADRYPDAKRTWIGAVYPNFKELSLWERYVTSMYWSIVTLTTTGYGDLHAENTREMLFDIFYMLFNLGLTAYIIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNHLPHHIQDQMLSHLCLKFKTEGLKQQETLNGMPKAIRASIAYHLFFSVVQKVYIFQGVSDDFLFQLVTEMEAEYFPPKEDVILQNESPTDLYMLVSGAVDLIRYVDGHDQILKKATAGDTFGEIGVLYCTPQPFTVRTTELSQILRLSRSSLMNSLHAYPEAAQIIMKNIFTVLKGHEGLDFEYPPRDPGLALYQMHDWDNTRGSFSDASKNNSARLHYLIPEDGKRDLHATLPNGHPDMEENEKKLSPIRWKQKPLVGQHQNKSISDLAMNHENRKTLDEHIIEFLEPEIPINHPLGKLYTNTYSSTSNHRTERETERFFKKRVTIHFHGKHKTTMQEQHGKLIILPDSLEELLHIAGEKFGVSKPTKVITRENAEIDDISVIRDGDHLFFSF 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01643 717 SUPERFAMILY cAMP-binding domain-like 304 494 IPR018490 -
Cca04g01643 717 Gene3D - 60 300 - -
Cca04g01643 717 Pfam KHA, dimerisation domain of potassium ion channel 646 715 IPR021789 -
Cca04g01643 717 CDD CAP_ED 377 490 IPR000595 -
Cca04g01643 717 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g01643 717 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g01643 717 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g01643 717 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g01643 717 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g01643 717 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca04g01643 717 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 541 715 - -
Cca04g01643 717 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 538 - -
Cca04g01643 717 SMART cnmp_10 377 494 IPR000595 -
Cca04g01643 717 ProSiteProfiles KHA domain profile. 647 717 IPR021789 -
Cca04g01643 717 PANTHER POTASSIUM CHANNEL AKT1 541 715 IPR045319 GO:0005249|GO:0006813
Cca04g01643 717 PANTHER POTASSIUM CHANNEL AKT1 1 538 IPR045319 GO:0005249|GO:0006813
Cca04g01643 717 Pfam Cyclic nucleotide-binding domain 397 477 IPR000595 -
Cca04g01643 717 Gene3D Jelly Rolls 344 501 IPR014710 -
Cca04g01643 717 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Cca04g01643 717 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Cca04g01643 717 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01643 Cca-Chr4 25601722 25610367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01643 1 716 Ion Channels AT5G46240 60.959 0.0 891