Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01611 ATGTCTTTCAGGCAGAGAACACCAACTTTCCGTCCACAACTTTCTATGCGTCGTGTGTACGAGAATTTGCAGCCACGATCAGAGATAAAAGAACTCCCAGGAGCTTATCTTCTACATATTTATCTTCCTGGATTTCCAAAGGAAAATGTAAAGGTTACATATGTGGCCCCTTCACGGATGGTGAGGATTTCAGGAGAAAGACAAATTCTAGGCTCCAGATGGATCCGATTCGACCAATCATATCCTGTTCCTGATTATTGTGAGCCAGAGGCACTTCAGGCCAAGTTTGAAACTCCAGTTCTCATCCTTACAATGCCAAAGAAGACCACTTCACAAGACGAAGGTGTAGTACCTAAAGCAAAGCCTGATGAAAAGGGCAAAGAAACCACTCCCCCACAACCTACAACAACTACTAAAGTGGAAGAACCAATTGAAGACAAGAAAAGTGCCTCACCACCAAGCCCTGACTTGAAGGCACAACAAAAGGCTACTCTTGAAGACACACCACCTCAAATCCCTTCGGAACCAATTAAGCCTCAGAAGGGTCAAGGGGAAGCTGTAGAAAGACTTAGTTCTGCAGTATCAGGTAAGCCTCAAATGAATCAAGAGTTGGAGCCAAAACCAACACCAAGGGCAACCACAATGCAAACAAATGAAAAGCCTCAAAAGGGTCAAGAGGAATTTGAACCAAGGCCAACACCGACAATCCTAACCAAAGTCAAAACAGCTGAGAAGCCCCAAAAGGGTCAAGAGGAATTTGAACCAAGAGCTACACCAACACCAACAATGCTAACCAAAGTAAAAACAGCTGAAAAGCCACAAATGGGTCAAGAGGAATTTGAACCAAGACCAACACCAACAATGCTAACCAAAGTCAAAACAGCTGAAAAGCCACAGATGGGTCAAGAGGAATTTGAACCAAGACCAACACCAACAATGCTAACCAAAGTCAAAACAGCTGAAAAAACCCAGGAGGGTCCAGGGGAATTTGAACAAAAATCAACACCAACAATAGCACCAAAAACCGAAACAGATGAGCAACCTCCAAAGAGTCAAGTGGAAGATGAGCCAAAACCTACAGTAACAAATGTTACCAGAAAGCCATCAGTTAAAGATCAAGTGGAGGAAAAGAAGACAGAGGAAACGAGTTCTGATGACGAGGAGGAAGTGAAAGAGGAACCTTCAGAGTCAAGAAAGCCTGTGAAAGATAAGGAGCAGAGTGATTTTGAAGAGAAGGAAACCAAGACAGAAAAATTGTTAGCCAAGGAAGTAGAACCTTCTGCTACAAAGAAGAAAAAAGAAAAAGAACCCAGCAGCATAACTACTCCCAAAAAGGAAGGGAAGTGCCAAGAGAATGCAAAGGAATGGGTTGGTTCTGTTTCCCAGGTTGTCAGAAAAATAGCAGAAGAGACATGGAACGAGGAAGAGAAAAAATTAGCAGCAAATATTGGTGCTGCATTTCTGGTGATTGCTGCATTGGGAGCTTATGTATCCTATAGGTTTTCCTCTTGA 1512 0.4299 MSFRQRTPTFRPQLSMRRVYENLQPRSEIKELPGAYLLHIYLPGFPKENVKVTYVAPSRMVRISGERQILGSRWIRFDQSYPVPDYCEPEALQAKFETPVLILTMPKKTTSQDEGVVPKAKPDEKGKETTPPQPTTTTKVEEPIEDKKSASPPSPDLKAQQKATLEDTPPQIPSEPIKPQKGQGEAVERLSSAVSGKPQMNQELEPKPTPRATTMQTNEKPQKGQEEFEPRPTPTILTKVKTAEKPQKGQEEFEPRATPTPTMLTKVKTAEKPQMGQEEFEPRPTPTMLTKVKTAEKPQMGQEEFEPRPTPTMLTKVKTAEKTQEGPGEFEQKSTPTIAPKTETDEQPPKSQVEDEPKPTVTNVTRKPSVKDQVEEKKTEETSSDDEEEVKEEPSESRKPVKDKEQSDFEEKETKTEKLLAKEVEPSATKKKKEKEPSSITTPKKEGKCQENAKEWVGSVSQVVRKIAEETWNEEEKKLAANIGAAFLVIAALGAYVSYRFSS 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01611 503 MobiDBLite consensus disorder prediction 329 346 - -
Cca04g01611 503 PANTHER HEAT SHOCK PROTEIN 26 3 259 IPR045045 -
Cca04g01611 503 PANTHER HEAT SHOCK PROTEIN 26 268 503 IPR045045 -
Cca04g01611 503 CDD ACD_sHsps-like 28 107 - -
Cca04g01611 503 MobiDBLite consensus disorder prediction 392 451 - -
Cca04g01611 503 PANTHER HSP20/ALPHA CRYSTALLIN FAMILY PROTEIN 3 259 - -
Cca04g01611 503 PANTHER HSP20/ALPHA CRYSTALLIN FAMILY PROTEIN 268 503 - -
Cca04g01611 503 SUPERFAMILY HSP20-like chaperones 9 112 IPR008978 -
Cca04g01611 503 MobiDBLite consensus disorder prediction 107 451 - -
Cca04g01611 503 Gene3D - 3 113 IPR008978 -
Cca04g01611 503 MobiDBLite consensus disorder prediction 206 221 - -
Cca04g01611 503 Pfam Hsp20/alpha crystallin family 29 113 IPR002068 -
Cca04g01611 503 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 18 123 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01611 Cca-Chr4 24454178 24456828 Dispersed