Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01608 ATGAACGCACCCATCATTGACCCGTTACAGGGAGATTTCCCTGAAGTGATAGAGGAGTATTTGGAACATGGGTGTATGAAATGTATTGCCTTTAATCGTCGTGGCACACTTCTTGCTGCTGGGTGCAATGATGGAAGTTGTGTTATCTGGGATTTTGAAACCCGGGGCATTGCTAAAGAGCTACGAGATGATGAATGTTCGTCTCCAATAACCAGTGTCTGCTGGTCAAAGTGTGGTAATCGAATTCTTGTATCTGCTGCTGACAAGTCATTGTCACTCTGGGATGTTATGAGTGGTAAGAGGATAACAAGAATAGTTTTACAACAAACCCCTCTACAAGCTCGTCTTCATCCGGGTTCCTCAAAACCATCTCTTTGCTTGGCATGTCCTCTCTCATGTGCTCCAATGATCATTGACTTGAACACAGGAAATACAACTTCGCTTAAAGTTTCTACCTTGGAGGTATCCGATAATGGACCAGCCCCTGGCTCACGTAACAGGTGCACTGATGGAATTACATCCTTCTCACCAACTGCTGCATGTTTTAGTAAGCATGGCAACCTGGTTTATGTGGGAAACTCAAAAGGGGAAATTCTTGTTATTAACCATATAGATGGTGGTGAGGTGCGTGCCATGGTTCCTATCCCTGGTGGTTCTGTAGTGAAGAACATTGTGTTCAGCAGGAATGGACAGTATCTTCTAACAAACTCAAATGATCGAATAATCAGGATCTATGAAAATCTTCTACCTTTGAAGGATGAAGTTAGAGCACTTGATGACCTGAATGAGAGCCTCAATGATCAGAATGGTGTTGAGAAGTTGAAGGCTGTAGGATCAAAATGCCTAACTTTATTCCGGGAGTTTCAAGATTCGATCACGAAGGTGCACTGGAAAGCACCCTGCTTCAGTGGTGATGGTGAGTGGGTTGTTGGTGGTTCTGCCAGTAAAGGAGAACACAAGATTTACATTTGGGATAGAGTTGGGCATCTTGTTAAAATCCTTGAAGGGCCTAAGGAAGCCCTTATTGATTTAGCATGGCATCCTGTACGTCCTATTGTTGTATCTGTTTCTTTGAATGGCATAGTTTATATCTGGGCCAAAGATTACACCGAGAACTGGAGTGCATTTGCTCCTGACTTCAAAGAGCTTGAGGAAAACGAGGAGTATGTGGAGCGAGAAGATGAATTTGATTTGATTCCTGAGACTGAGAAGGTAAAAGCGTCTGATGTTAACGAAGATGACGAAGTTGACATTGTAACGGTGGAGAAAGATCCTGCTTTCAGTGACTCTGATATGTCTCAAGAAGAGTTGTGTTTTCTGCCAGCAACTCCCAGTTGTGATGCTCCTGAACAGCAAGACAAGTTCATAGAAAGTTCTTCAAAATTGGTGGACAGTAATAACTCTGGATCCCCTCTTTCAGAAGAGGCGGGACCAAATGAACATACCATGAATCATAACTCAAGTCCAGTTGAAGATGATGCTGGGGGAGCACGAATCAAGAGAAAGAGGAAACCTTCAGAGAAGGTGTTGGAGTTGCAGGCAGAGAAAATAAAGAAACCATCAAAATCTAGCAAATCTTCAAAATCCAAAAGTAAATCTCTGGTTGATGAGGATGATGGTAATGGTTTTTATGGTGATGCATTTTCTGATGAGTAA 1656 0.4269 MNAPIIDPLQGDFPEVIEEYLEHGCMKCIAFNRRGTLLAAGCNDGSCVIWDFETRGIAKELRDDECSSPITSVCWSKCGNRILVSAADKSLSLWDVMSGKRITRIVLQQTPLQARLHPGSSKPSLCLACPLSCAPMIIDLNTGNTTSLKVSTLEVSDNGPAPGSRNRCTDGITSFSPTAACFSKHGNLVYVGNSKGEILVINHIDGGEVRAMVPIPGGSVVKNIVFSRNGQYLLTNSNDRIIRIYENLLPLKDEVRALDDLNESLNDQNGVEKLKAVGSKCLTLFREFQDSITKVHWKAPCFSGDGEWVVGGSASKGEHKIYIWDRVGHLVKILEGPKEALIDLAWHPVRPIVVSVSLNGIVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLIPETEKVKASDVNEDDEVDIVTVEKDPAFSDSDMSQEELCFLPATPSCDAPEQQDKFIESSSKLVDSNNSGSPLSEEAGPNEHTMNHNSSPVEDDAGGARIKRKRKPSEKVLELQAEKIKKPSKSSKSSKSKSKSLVDEDDGNGFYGDAFSDE 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01608 551 MobiDBLite consensus disorder prediction 460 551 - -
Cca04g01608 551 Pfam WD domain, G-beta repeat 68 95 IPR001680 GO:0005515
Cca04g01608 551 Pfam WD domain, G-beta repeat 22 51 IPR001680 GO:0005515
Cca04g01608 551 Pfam WD domain, G-beta repeat 281 325 IPR001680 GO:0005515
Cca04g01608 551 MobiDBLite consensus disorder prediction 494 522 - -
Cca04g01608 551 Gene3D - 134 425 IPR015943 GO:0005515
Cca04g01608 551 ProSitePatterns Trp-Asp (WD) repeats signature. 38 52 IPR019775 -
Cca04g01608 551 SUPERFAMILY WD40 repeat-like 23 365 IPR036322 GO:0005515
Cca04g01608 551 Gene3D - 13 130 IPR015943 GO:0005515
Cca04g01608 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 26 60 IPR001680 GO:0005515
Cca04g01608 551 ProSiteProfiles Trp-Asp (WD) repeats profile. 67 104 IPR001680 GO:0005515
Cca04g01608 551 SMART WD40_4 206 246 IPR001680 GO:0005515
Cca04g01608 551 SMART WD40_4 13 51 IPR001680 GO:0005515
Cca04g01608 551 SMART WD40_4 162 202 IPR001680 GO:0005515
Cca04g01608 551 SMART WD40_4 327 366 IPR001680 GO:0005515
Cca04g01608 551 SMART WD40_4 54 95 IPR001680 GO:0005515
Cca04g01608 551 SMART WD40_4 278 325 IPR001680 GO:0005515
Cca04g01608 551 PANTHER RETINOBLASTOMA-BINDING PROTEIN 5 1 533 IPR037850 GO:0048188
Cca04g01608 551 MobiDBLite consensus disorder prediction 460 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01608 Cca-Chr4 24395830 24401703 Dispersed