Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01601 ATGCGCAATTCAAAGTACGCAGCGTTTCTTCTCGTAGCACGTGCCAAGTCTCTCCAACGTCACCACCACACGTGTCGCTGCCTTCCTTCTTCTTATTCTTCTCCCGCAACCCCACTCTTCAGGTTTTGGCGTTCTTCCCTGTGCAGTGCGAAAACCCTCGCCGCCACGCGCCTCTTCTCTAGCTACTACTCCCTCGAACAATTCTCCGATGACGAATACGACTGCGATTTCGAGAACCAGCAGGCATCATCTACTGTGGCCAATGTGGATGAGTGGAAATGGAAACTCAGCATGCTGTTACGCAGCGAGAAGGACCAGGAGATTATATCTAGAGACAGAAAAGATAGGAGGGACTATGAACAGATAGCTAACCTTGCCAAAAGAATGGGGCTTTACAGTGAGTTGTTTGGAAAAGTGGTTGTAGCAAGCAAGGTGCCTCTTCCTAACTACCGCCCAGATTTGGATGACAAACGTCCACAGAGAGAGCTGGTAATTCCACTAAGTTTGCAAAGGAGGGTTGAGGGTTTGTTGCAGGAATACCTTGATAGACTTCAGTTGAATTCTGCAAAGACAGCTGATAGCGTGGATGATGTGAACTCCACCAATCAAGTTAAAGATATAGAAATGGATGAAAGTGCTGATTCTTTTGTAGATGAATCTGTTATGGAAAAGGTTCTCCAAAAGAGGAGTTTGAGGATGCGTAATATGCAAAGAGCTTGGCAGGAATCACCTGAAGGCAGGAAGATGCTGGAATTCCGGAAGTCTCTACCATCATTCAAGGAGAAGCAACGTTTACTTCAAGCTATAGCACATAATCAGGTGATAGTTGTATCGGGAGAGACTGGCTGTGGTAAAACCACTCAACTTCCTCAGTATGTATTAGAATCAGAGATCGAGTCTGGTCGTGGAGCATTTTGTAGCATTATTTGCACACAGCCTCGAAGGATATCTGCCATGGCAGTGTCTGAGAGAGTGTCAGCAGAGCGAGGAGAGCCTCTTGGTGAAACAGTTGGCTTCAAAGTTCGATTAGAAGGAATGAAAGGAAAAAACACCCATCTGCTGTTTTGTACCAGTGGTATATTACTTAGAAGGTTGTTGAGTGATCGAAACCTGAATGGTATAACTCATGTTTTTGTGGATGAAATTCATGAAAGAGGCATGAATGAAGACTTCTTACTGATTGTGTTAAAGGATCTGCTTCCACGTCGTCGGGATTTAAGATTGGTTTTAATGAGTGCCACCTTGAATGCTGAGCTCTTCTCAAAGTATTTTGGAGGTTCTCCTACATTTCATATTCCGGGTTTCACCTATCCAGTTAGAGCTCACTTTTTAGAAGATGTTTTGGAAATGACTGGATATAAATTGACTTCCTTCAACCAAATTGATGATTATGGTCAAGAGAAAATGTGGAAGACACAAAAGCAACTAGCACCACGGAAGAGGAAAAACCAGATCACTGCCCTTGTTGAGGATGCTCTTTCTAAATCAAGCTTTGAGAACTATAGCTCCAGGGCACGTGATTCACTAGCATCTTGGACACCTGACTGCATAGGGTTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGACCGGGTGCTGTCTTAGTATTTATGACTGGGTGGGAGGATATAAGCTCTTTAAGAGATCAGCTTAAAGCACATCCTCTTTTAGGAGATCCCAATAGGGTTTTGCTTCTAACGTGTCATGGTTCAATGGCAACATCAGAACAGAAACTCATATTTGAGAAGCCACCTCCAAATATAAGGAAAGTGATACTTGCTACAAATATGGCCGAGGCAAGTATTACAATCAATGACATAGTTTTTGTGGTTGATTGCGGAAAAGCAAAAGAAACAACTTATGATGCTTTGAATAACACCCCGTGTCTTCTTCCTTCCTGGATATCACAAGCATCTGCACGGCAGGCATGTATCCATAGAAGGGGTAGGGCTGGCCGTGTGCAGCCAGGAGAATGTTACCACCTTTACCCCAAATGTGTTTATGAAGCCTTTTCTGAGTATCAACTTCCCGAACTGCTGAGAACACCATTGAACTCTCTTTGTTTGCAAATAAAAAGTTTGCAGGTTGAGAGCATAGGAGAGTTCTTATCAGCAGCTTTACAGGCACCAGAGCCACGGGCCGTTCAAAATGCTATTGATTTTCTCAAGATGATTGGGGCATTAGATGAAAAAGAAAGTCTTACGAATCTTGGGAAGTTTCTCTCCATGCTTCCTGTGGATCCTAAGCTGGGAAAAATGTTAATAATGGGAGCTATATTTAGATGCTTTGATCCTGTTCTTACAATAGTTTCTGGCCTTAGTGTCAGGGATCCTTTTCTTTTGCCCCAAGACAAGAGGGATTTAGCAGGGACAGCAAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGAGCATATGAAGGATGGAAAGATGCAGAAAGAGAAGGGTCAGCTTATGAATACTGCTGGAGAAATTTTCTTTCGGCCCAAACTCTACAGGCTATTCATTCACTTCGGAAGCAGTTTAGCTTCATCTTGAAAGAAGCGGGCTTAGTAGATCCAGATGCAAGCATTATTAACAGATTGAGTCACAATCAGTCTCTTGTGCGTGCCATCATTTGTTCTGGACTCTTTCCTGGCATAGCATCAGTGGTGCACAGGGAGACATCCATGTCATTTAAAACGATGGATGATGGCCAGGTTTTATTATATGCTAATTCAGTGAATGCACGTTACCAGACCATACCTTACCCATGGTTGGTTTTTGGTGAGAAAGTTAAGGTCAATGCTGTTTTCATCCGTGATTCCACCGGTGTATCTGATTCAATACTTATCCTTTTTGGTGGTGCTCTGAGTAATGGGATACAGGCGGGGCATCTAAAAATGTTAGATGGGTACGTTGACTTCTTCATGGATCCTAGTTTAGCTGACTGCTATTTGAAGCTTAAGGAAGAGCTCAATAAGCTTATCCAGAAGAAGCTTGAAGATCCTAGCATCGACATTCACAAGGAAGGGAAGTACTTGATGCTTGCTGTTCAGGAGTTGGTTTCAGGGGATCAATGTGAAGGACGATTTGTATTTGGCCGTGAAAGCCGTAAGCCTAGAGCCTCTAATGATGAGAACAAATTCACAAAAGATGGAACAAATCCCAAGAGCTTGCTTCAAACACTGTTGATGCGAGCAGGGCACTCCCCTCCAAAATACAAAACAAAACATCTCAAGACTAATGAGTTTAGGGCACTGGTGGAGTTCAAGGGAATGCAGTTTGTGGGCAAACCGAAGAGAAACAAGCAACTTGCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACCTCTGACAATAATCAGCATGAAGATGATAATTCTCCTCCTGATGTCACTGACAACATGCTAAAACTCCTAGGGAAGCGTAGAAAATCAAAGCGTCGCCATGGTTGA 3477 0.4334 MRNSKYAAFLLVARAKSLQRHHHTCRCLPSSYSSPATPLFRFWRSSLCSAKTLAATRLFSSYYSLEQFSDDEYDCDFENQQASSTVANVDEWKWKLSMLLRSEKDQEIISRDRKDRRDYEQIANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQRELVIPLSLQRRVEGLLQEYLDRLQLNSAKTADSVDDVNSTNQVKDIEMDESADSFVDESVMEKVLQKRSLRMRNMQRAWQESPEGRKMLEFRKSLPSFKEKQRLLQAIAHNQVIVVSGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSKYFGGSPTFHIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKMWKTQKQLAPRKRKNQITALVEDALSKSSFENYSSRARDSLASWTPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISSLRDQLKAHPLLGDPNRVLLLTCHGSMATSEQKLIFEKPPPNIRKVILATNMAEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQACIHRRGRAGRVQPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPEPRAVQNAIDFLKMIGALDEKESLTNLGKFLSMLPVDPKLGKMLIMGAIFRCFDPVLTIVSGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILKEAGLVDPDASIINRLSHNQSLVRAIICSGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLKMLDGYVDFFMDPSLADCYLKLKEELNKLIQKKLEDPSIDIHKEGKYLMLAVQELVSGDQCEGRFVFGRESRKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPKRNKQLAERDAAIEALAWLTHTSDNNQHEDDNSPPDVTDNMLKLLGKRRKSKRRHG 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01601 1158 SUPERFAMILY dsRNA-binding domain-like 1052 1133 - -
Cca04g01601 1158 Pfam Helicase associated domain (HA2) 722 808 IPR007502 GO:0004386
Cca04g01601 1158 Gene3D - 518 678 IPR027417 -
Cca04g01601 1158 Gene3D - 205 434 IPR027417 -
Cca04g01601 1158 PANTHER ATP-DEPENDENT RNA HELICASE 66 1051 - -
Cca04g01601 1158 Pfam Double-stranded RNA binding motif 1059 1121 IPR014720 -
Cca04g01601 1158 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 66 1051 - -
Cca04g01601 1158 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 699 IPR001650 -
Cca04g01601 1158 SMART helicmild6 549 659 IPR001650 -
Cca04g01601 1158 MobiDBLite consensus disorder prediction 1125 1158 - -
Cca04g01601 1158 Pfam DEAD/DEAH box helicase 264 417 IPR011545 GO:0003676|GO:0005524
Cca04g01601 1158 MobiDBLite consensus disorder prediction 1038 1058 - -
Cca04g01601 1158 Pfam Helicase conserved C-terminal domain 524 658 IPR001650 -
Cca04g01601 1158 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 266 433 IPR014001 -
Cca04g01601 1158 SMART ha2_5 721 812 IPR007502 GO:0004386
Cca04g01601 1158 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 878 959 IPR011709 -
Cca04g01601 1158 Gene3D - 1038 1126 - -
Cca04g01601 1158 CDD DEXHc_RHA-like 272 432 - -
Cca04g01601 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 260 820 IPR027417 -
Cca04g01601 1158 SMART DRBM_3 1059 1122 IPR014720 -
Cca04g01601 1158 MobiDBLite consensus disorder prediction 1038 1055 - -
Cca04g01601 1158 CDD SF2_C_RHA 510 667 - -
Cca04g01601 1158 SMART ultradead3 254 447 IPR014001 -
Cca04g01601 1158 Gene3D - 701 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01601 Cca-Chr4 24218898 24262415 Dispersed/Transposed