Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01600 ATGGctaccactgccactgccactgccactcccactctctccttccactttccctcccCAACCCTCTCTTCGCCCTCTTCACCTTCCCTATTCAAACCCTACACCGTTGCTTCCCGCCAAAACCTCTCCTTCGCCACCACCTCCTTCGCTTTCACCAACTCCACCTCTCCTACTTTTCTCGCCAAGGCTTCTCCCAACTCGCTCCCTCCTTACAACGTTTTGATCACTGGCTCTACCAAAGGAATAGGGTATGCTTTGGCGAAAGAGTTTCTAAAAGCTGGTGACAATGTTGTGGTTTGCTCGAGATCAGTTGAAAGGGTAGAGACAGCTGTCCAGAGCTTGAAAGTAGAATTTGGGGAGCAGCATGTGTGGGGAACTGCATGTGATGTGAGAAATGCAGAGGATGTGAAGAATTTAGTTTCATTTGCTCGAGAAAAGTTGAAATACATTGATATATGGATCAACAACGCTGGATCAAATGCATATAGCTATAAGCCACTTGTTGAGGCTTCAGATGAAGATCTTGTTGAGGTTGTTACAACAAATACACTTGGCTTGATGATATGTTGTCGAGAGGCAATTAAGATGATGGTGAGCCAGCCTCGTGGAGGTCATATTTTCAATATTGATGGAGCAGGTTCAGATGGAAGACCAACTCCCAGGTTTGCTGCATATGGAGCAACAAAGAGAAGTGTGGTGCATTTAACAAAGTCATTACAGGCAGAATTGCAGATGCAAGATGTTAAAAATGTGGTGGTGCATAATCTTTCGCCAGGAATGGTTACAACGGATCTTCTCATGTCTGGTGTTAATACAAAGCAGGCAAAGTTTTTCATCAATGTCTTGGCTGAACCAGCCGAAGTGGTTGCAGAATACTTGGTTCCAAATATAAGATCCATCCCTGCTAATGGATCAATGAAGCCAACATACATTAAATTTCTCACTGGTTTGAAAGCCTATTCGCAGATATTTTCAAGATTGGCATTCGGCGCAAGAAGGAACCGATACATTCTTGAAGATTAA 1023 0.4115 MATTATATATPTLSFHFPSPTLSSPSSPSLFKPYTVASRQNLSFATTSFAFTNSTSPTFLAKASPNSLPPYNVLITGSTKGIGYALAKEFLKAGDNVVVCSRSVERVETAVQSLKVEFGEQHVWGTACDVRNAEDVKNLVSFAREKLKYIDIWINNAGSNAYSYKPLVEASDEDLVEVVTTNTLGLMICCREAIKMMVSQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRSVVHLTKSLQAELQMQDVKNVVVHNLSPGMVTTDLLMSGVNTKQAKFFINVLAEPAEVVAEYLVPNIRSIPANGSMKPTYIKFLTGLKAYSQIFSRLAFGARRNRYILED 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01600 340 Pfam short chain dehydrogenase 73 268 IPR002347 -
Cca04g01600 340 PRINTS Glucose/ribitol dehydrogenase family signature 72 89 IPR002347 -
Cca04g01600 340 PRINTS Glucose/ribitol dehydrogenase family signature 148 159 IPR002347 -
Cca04g01600 340 PRINTS Glucose/ribitol dehydrogenase family signature 198 214 IPR002347 -
Cca04g01600 340 PRINTS Glucose/ribitol dehydrogenase family signature 225 244 IPR002347 -
Cca04g01600 340 PRINTS Glucose/ribitol dehydrogenase family signature 249 266 IPR002347 -
Cca04g01600 340 CDD SDR_c 73 294 - -
Cca04g01600 340 Gene3D - 61 306 - -
Cca04g01600 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 159 IPR002347 -
Cca04g01600 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 204 212 IPR002347 -
Cca04g01600 340 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 225 244 IPR002347 -
Cca04g01600 340 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 212 240 IPR020904 GO:0016491
Cca04g01600 340 PANTHER NON-SPECIFIC LIPID TRANSFER PROTEIN-RELATED 31 340 - -
Cca04g01600 340 PANTHER CHLOROPHYLL(IDE) B REDUCTASE NOL, CHLOROPLASTIC 31 340 - -
Cca04g01600 340 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 67 291 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01600 Cca-Chr4 24205677 24217117 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01600 73 265 Acyl Lipid Metabolism Gene Families AT1G24360 31.658 1.55e-16 77.4