Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01599 ATGGCACCAAAACCAGTTTCCCTTTCACATCTTCTCCTTTTAGTCTTGTTTCTTGGCATCCAACTTTCAGAGCAGTTAGAGTTTTCTCAGTCTCAAACACTTCTCAAAGTTCAGCAACTTCTTGGCTATCCATCAGCACTAGGTACCCTAAGCAGCACCACAGACTTTTGCAACATTGAACCTACCACATATTTGACACTAGTCTGCTATGAGGATATCTTGACACAGCTGCATGTTGTTGGCAACAATGATTTTATTACCCCACTGCCTCAAAACTTCTCCTCAGACACTCTTTTTGCTACACTAGGCACTTTATCAAGCTTGAAAGTCCTCTCTTTGGTTTCTCTGGGACTCTGGGGGGGCTTACCTGAAAGCATTGGTCAATTGTCTTCATTGGAAATACTTAACATTAGCTCAAATTACTTCAATGGAGCCATCCCTTCTCAACTTTCTCTTCTGAGGAACCTGCAGTCAGTGGTGCTTGATGATAACAACTTCAATGGTGAAATTCCCAACTGGGTAGGCTCCCTCCAAGGTTTGGCCGTGCTTAGTATGAAGAAAAACTGGCTTAGTGGAAGCATTCCAACTTCATTGGATGCTCTTCATACCTTGAGAGTGTTGGATCTATCAAATAATCAGTTATCTGGGGAACTTCCTCATTTTAAGAATTTGGCAAACCTTCAAGTTCTTAACTTGGAAAACAACACATTTGGACCTCGTTTTCCTTCTCTCCCCACCAAGTTAGTTTCCCTTGTGCTAAGAAACAACAGCTTCAGGCTTGGTGTCCCTTCTCATTTAAGTTCTTTCTATCTGCTCCAAAAGCTAGACCTTTCACTGAATGGTTTTGTAGGGCCATTTCCACCATCCTTGTTGTCACTGCCTTCCATCAATTACCTTGATGTTTCCTCAAACAAATTCACTGGGATGCTTTTCAACAACATGTCATGCAACGATGATCTCCACTTTGTAAATTTGTCCTCAAATCTTCTGAAAGGGGAACTTCCCACTTGTTTAGAACCAAAGACCAGGGTTGTTTTGTATGATAGAAACTGCTTATCAAATAAGGGCCAAGATCAGCACCCTTCAGATTTCTGCAGCAATGAGGCTTTGGCAGTGAGAATCACACCCCATCAAGAGAAGCACAAGAGAACAACTAGTAAAGCAGTTATTGTGTCAAGTATGGGAGGTGTTGTTGGTGGAGTGTTGCTTGTAGGAGTGGTTATCTTGGTAGTTAGCCGAGTTCATAAGAAAAAAGTAGTGAAAATACCTTCAAAGTCCACTTTGGAGCATGCTATCAGCCAGGAAGATAATGAAGACGAAGTGAAAACTACTACAAGGTCAATAATGGAGCATATCATCAAAAGGGTTGCTGACAAACATGCTGTGAAGACACTTACAAGATCCATAAAGGAGCATGTCATGAGCCGAGTGAATAACAAGCGTGTTGTGAGGGCTTCAACAAGGTCCATAATAGAACATGTATCATCAGCAAACACAGCAAAACTACTCACAGATGCAAGATATATATCAGAGACAATGAAGATGGGAGCCAGCCTTCCTGCTTATAGGACCTTTGCTTTGGATGAACTTAAGGAAGCTACAAATAATTTTGATGCATCATGTTTCATAAGTGAAGGTCCACATGGTCAGATTTATAAGGGGGTGCTCTCTGATGGAATGCACATTGCTATTAGAGGTTTGAAAATGAGAAAGAGACATGGCCCTCAGAATTACATGCACCATGTTGAGTTGATTTCAAAGCTTAGGCATTCACACTTGGTTAGTGCTCTTGGGCATGCCTTTGAGTGCAACCAGGATGATTCATGTGTAAACAATGTATATCTCATATTTGAGTTTGTTCCAAATAGAAGTTTAAGAAGCTTCGTTTCTGAATCTTCTGGGGAAAAGCTTTCTTGGACTCAGAGAATAGCAGCTGCAATAGGAGTGGTGAAAGGCATTCAATTTTTGCACACAGGGATAGTGCCTGGACTATATTCAAATAATCTGAAGATAACTGATGTTCTTTTGGATAACAATCACAATGTTAAAATAAGCAGTTATAATCTGCCACTCTCTGCTGAAAATAAAAAAACGATCAGCAATGGAACTTCCTCTGGATTAAAAGGAAATGTCCAAGCAAGGATCAAGGATGTAGACAAGAATGATGTCTATGATATTGGGGTAATCTTGCTAGAAATCATTCTGGGACGACCAATAATGTTCCACAATGAAGTTGGAACACTAAAAGATCTCTTACAGGTAAGCATTAAAACTGATGACATAGCTAGAAGGAGTATTGTTGACCCAGCAGTTCACAAGGATTGTTCAGATGAGTCATTGATGACAATGATGGAGATATGTGTAAGGTGTCTCTCTAGTGACCCAACTGAAAGGCCTTCTGTGGAAGATATTCTCTGGAATTTGCAGTTTGCAGTACAAGTTCAAAATTCATGGAAAAGGGACTCTAGTGATCACAGTTACTCGCCTGCACCATCCTCCAGGGAAACATGA 2511 0.4074 MAPKPVSLSHLLLLVLFLGIQLSEQLEFSQSQTLLKVQQLLGYPSALGTLSSTTDFCNIEPTTYLTLVCYEDILTQLHVVGNNDFITPLPQNFSSDTLFATLGTLSSLKVLSLVSLGLWGGLPESIGQLSSLEILNISSNYFNGAIPSQLSLLRNLQSVVLDDNNFNGEIPNWVGSLQGLAVLSMKKNWLSGSIPTSLDALHTLRVLDLSNNQLSGELPHFKNLANLQVLNLENNTFGPRFPSLPTKLVSLVLRNNSFRLGVPSHLSSFYLLQKLDLSLNGFVGPFPPSLLSLPSINYLDVSSNKFTGMLFNNMSCNDDLHFVNLSSNLLKGELPTCLEPKTRVVLYDRNCLSNKGQDQHPSDFCSNEALAVRITPHQEKHKRTTSKAVIVSSMGGVVGGVLLVGVVILVVSRVHKKKVVKIPSKSTLEHAISQEDNEDEVKTTTRSIMEHIIKRVADKHAVKTLTRSIKEHVMSRVNNKRVVRASTRSIIEHVSSANTAKLLTDARYISETMKMGASLPAYRTFALDELKEATNNFDASCFISEGPHGQIYKGVLSDGMHIAIRGLKMRKRHGPQNYMHHVELISKLRHSHLVSALGHAFECNQDDSCVNNVYLIFEFVPNRSLRSFVSESSGEKLSWTQRIAAAIGVVKGIQFLHTGIVPGLYSNNLKITDVLLDNNHNVKISSYNLPLSAENKKTISNGTSSGLKGNVQARIKDVDKNDVYDIGVILLEIILGRPIMFHNEVGTLKDLLQVSIKTDDIARRSIVDPAVHKDCSDESLMTMMEICVRCLSSDPTERPSVEDILWNLQFAVQVQNSWKRDSSDHSYSPAPSSRET 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01599 836 Gene3D Ribonuclease Inhibitor 149 243 IPR032675 -
Cca04g01599 836 ProSiteProfiles Leucine-rich repeat profile. 203 225 IPR001611 GO:0005515
Cca04g01599 836 Pfam Protein tyrosine and serine/threonine kinase 543 806 IPR001245 GO:0004672|GO:0006468
Cca04g01599 836 Gene3D Transferase(Phosphotransferase) domain 1 620 828 - -
Cca04g01599 836 Gene3D Ribonuclease Inhibitor 244 345 IPR032675 -
Cca04g01599 836 Pfam Leucine rich repeat 154 214 IPR001611 GO:0005515
Cca04g01599 836 Gene3D Phosphorylase Kinase; domain 1 497 619 - -
Cca04g01599 836 ProSiteProfiles Protein kinase domain profile. 537 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01599 836 SUPERFAMILY L domain-like 89 336 - -
Cca04g01599 836 Gene3D Ribonuclease Inhibitor 29 148 IPR032675 -
Cca04g01599 836 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 11 433 - -
Cca04g01599 836 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 476 826 - -
Cca04g01599 836 SUPERFAMILY Protein kinase-like (PK-like) 516 810 IPR011009 -
Cca04g01599 836 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 476 826 - -
Cca04g01599 836 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 11 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01599 Cca-Chr4 24177614 24183246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01599 473 833 Miscellaneous Gene Families AT3G03770 58.856 6.94e-141 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Cca04g01599 PK_Tyr_Ser-Thr 1e-17 CL0016