Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01592 AGGATGCATCGGCTTTGAAGTTCATCCCGCACCAAATCGGAGGTGTCCAAAACGACGCGCTTCGATTCGGTCTCCATGGAGTCAAGAGCGACATCGTTGGTTCTCACCCTCTCCAATCTTCCCTCCAATCTACAAGGAGAATGGAAGAAGCGATGAAGAGGCAATGCAAAGTCAACTTATATGGAATTGTTTTTCCTCTGAAGGAGGAACTTGACAGGCAAATATTGTCACGTTCGAAGGGCTTAAAAATTTTGAACTTGGGAGATGCCCAACCCACTATTGGTATAAAGAAGGTTCTCGAGAatgatgatgatgatgttgttgatCCACATCTTGAGCGCATAAAAAATGAAGCTGGTGGGGATGAAAGTGATGAGGAGGATTCTGATTTTGTTGCTGACAAGAATGATGAAGGTTCTCCCACTGATGATTCTGGGGCAGACGATTCTGATGGCAGTGATAGTGGTGATGACATAGAGGCAAGTGATTTTTGTTTGCGTTTGTTTGTTATCTTTGTGATTCTTCTATATTCTTTAAATATATATATGGTGTCTGACAAGTTTAATATGGCCAATTTTCAGAAGCCTGCCAAAAAGGAATCAAAGAAGGACCTGCCTTCTAAGGCATCTACTTCTaaaaagaaaccaaaagatgatgaagatggaaagaagaaaaaacaaaagaagaaaaagGACCCAAATGCACCGAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTGAAGAAAACTAATCCTGCAATTTCATTTACGGATGTGGGAAGAGTACTTGGAGAGAAATGGAAAAATATGTCAGATGAGCCTCATAAGTTTGCTATTGTTCACAAGGTTTTTGGGGCTAGCAATGTCAACAAAATGCTACAGGAATTACCTGAGCAACAACGTAGTGATGCTGTTAGTGCAATGGTTTATGAAGCGAATGCAAGGGTTAGGGACCCTGTGTATGGATGCGTGGGAGCCATATCCTCTCTTCAGCAACAAGTTGATGAGTTACAAACCCAGTTGGCACTAGCACAAGCAGAGGTTGTGCACATGAGAATGTGCCACGCGTCAACTTCATCTGATCAACACAAACCAGCCTCCAATACATCCTCAGAGAACTTGTCCCCATCAACCAAACATGGGGGAGTCATTGTGGTCATGTTAGtatccagggctgatagcggtgactaa 1211 0.3939 DASALKFIPHQIGGVQNDALRFGLHGVKSDIVGSHPLQSSLQSTRRMEEAMKRQCKVNLYGIVFPLKEELDRQILSRSKGLKILNLGDAQPTIGIKKVLENDDDDVVDPHLERIKNEAGGDESDEEDSDFVADKNDEGSPTDDSGADDSDGSDSGDDIEASDFCLRLFVIFVILLYSLNIYMVSDKFNMANFQKPAKKESKKDLPSKASTSKKKPKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPAISFTDVGRVLGEKWKNMSDEPHKFAIVHKVFGASNVNKMLQELPEQQRSDAVSAMVYEANARVRDPVYGCVGAISSLQQQVDELQTQLALAQAEVVHMRMCHASTSSDQHKPASNTSSENLSPSTKHGGVIVVMLVSRADSGD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01592 402 MobiDBLite consensus disorder prediction 195 237 - -
Cca04g01592 402 ProSiteProfiles LOB domain profile. 241 354 IPR004883 -
Cca04g01592 402 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 235 282 IPR009071 -
Cca04g01592 402 MobiDBLite consensus disorder prediction 113 155 - -
Cca04g01592 402 Pfam Lateral organ boundaries (LOB) domain 277 351 IPR004883 -
Cca04g01592 402 Gene3D High mobility group box domain 217 313 IPR036910 -
Cca04g01592 402 Pfam Proteasome maturation factor UMP1 15 79 IPR008012 GO:0043248
Cca04g01592 402 MobiDBLite consensus disorder prediction 361 384 - -
Cca04g01592 402 CDD HMGB-UBF_HMG-box 235 279 - -
Cca04g01592 402 MobiDBLite consensus disorder prediction 195 226 - -
Cca04g01592 402 SUPERFAMILY HMG-box 222 279 IPR036910 -
Cca04g01592 402 Coils Coil 333 353 - -
Cca04g01592 402 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 277 378 - -
Cca04g01592 402 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 277 378 - -
Cca04g01592 402 Pfam HMG (high mobility group) box 235 279 IPR009071 -
Cca04g01592 402 SMART hmgende2 234 304 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01592 Cca-Chr4 23918342 23932645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01592 277 402 AS2 family AT1G16530 58.268 2.53e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca04g01592 LOB 2.3e-26 No_clan