Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01588 ATGCAAACCAAACGTGTCCCCGCCAGATTCTCTTTGTTTTTCAGAGCCCACTTCTCAAATTCACCCAACAAACCAATGCTGATAAGAAGACAACAGTTTCATTCAAAAGCATCACCTGAACTCCAAAACAATAGAGGGTTTTGCTTCCAGGACTGTGTTTCCCTCTTGCAACACCTGAGGGACCACAAAGACGTAAACTGTGGCAGAACCCTTCACTCTCTTTTTCTTAAAAGTGCCCTCGACCAGGATGTCTTTGTGCAAAATAATATGGTTAGATTTTATGGAGATATTGGAGAAGTTAAGAATGCACAAAAGTTGTTTGATGAAATTCCTCAACCGAGTTTGGTTTCTTGGACCAGCTTGGTTTCTTGTTATGTCCATGTGGGGCAGCATGAAATGGGTCTGAGCTTGTTTCGTGGCTTGTGTCGGTCCGGGATGCGTCCCAACGAGTTTGGTTTCTCTGTGGCACTCAAGGCTTGCAGGGTGATGTGTGATCCTGTGATGGGGAAGCTCATTCATGGGTTGATACTCAAAAGTGGTTTTGATTCGCATAGTTTTTGTAGTGCTTCGATTCTTCACATGTATGCTGATTGTGGGGATATTGAGAATTCGACGAAAGTTTTTGATGGGGTTTGTTTTGGTGAAAGGTGTGAGGCATTGTGGAACATTTTGCTGAATGCATACGTGGAGATGGGTGATGTGAAGGGTTCTTTGAAGTTGTTTCACGAGATGGGTCACTCTGCTGTGGCACGGAATCACTTTACATACACAATCATTGTTAAACTCTGTGCTGATGTGTTGGATGTTGAACTTGGAAGGTCTGTTCATGGCCAGACTGTGAAGATTGGCATTGAAAATGATGTTGTGGTGGGTGGAGCTCTTATTGACTGCTATATTAAACTGAAATTATTAGATGATGCTCGTGTAGTGTTTCAATTTCTTGAGGAGAAGGATAATGTGGCAATATGTTCTTTACTTGCTGGGTTTAATCAGATTGGAAAATCTAAGGAAGGACTTGCATTATATGTTGATTTTCTTTGTGAAGGTAACAAACCAGATCCATTTACTTCTGCGAGCGTTGCCAGCTTGTGCTCAAATCTGGAGGCAGAGCTTGCTGGTACTCAAATTCACTGTAGTGTCATAAAACTTGGCTTTAAGATGGATTCATATCTTGGCAGTGCCTTTATAAACATGTATGGAAACTTTGGGATGATATCTGATGCTTATAAATGTTTTCTTGAAGTATGCAACAAGAATGAAATATGCGTAAGTGCCATGATGAATACTTTAATTTTCAATTCAAATGATTTGAAAGCTTTGGAGCTGTTTTGTGGGATGAAGGAAGTTGGTATTGCACAAAGCAGTTCTTCAATCAGTTATGTTCTGCGGGCTTGTGGGAACCTTTTTATGCTTAAAGAAGCAAGATCTTTTCATTCTTACATGATTAAAAATCCTTTTGAAGAGGATTGTAGGTTGGGCTTAGAAAATGCTCTTCTTGAGATGTATGTTAGATGTAGAGCTATTGATGATGCGAAATTGATTTTCAAAAGAATGCCGATAAGAAATGAGTTTTCCTGGACTACTATCATATCCGGATGCGGTGAATTGGGCCACTTTGTAGAAGCTCTGGGGATCTTCCGCGATATGCTTCAATATTCAAAACCTAGTCAGTTCACATTGATTAGTGTTATTCAGGCTTGTGCAGAAATAAAGGCACTTGATGTAGGAAAGCAAGCCCAATCTTATATCATCAAAGTATTCTTGTCCATGAAAGAGAAAGATCTTATCTCTTGGAGTGCCATGTTAACGGCATGGGTCCAAAATGGTTATCATGAAGAAGCACTTAAGCATTTTGCAGAATTCCAAACTGTTCCCATTTTTCAGGTTGATGAGTCTATCTTATCCAGCTGTATATCAGCTGCTTCTGGGTTAGCGGCATTGGACATAGGCAAATGTTTCCATTCGTGGGTTATCAAAGTTGGCTTTGTGGTTGATCTTCATGTGGCTTCTTCCATTACAGACATGTATAGCAAATGTGGAAACATTAAAGATGCCTGCAAGTTTTTCAATACTATCAGTGACCATAATTTAGTAACCTTGACAGCTATGATATATGGATATGCTTATCATGGGCTTGGAAGAGAAGCTATTGACCTGTTTAACAAAGCAACAGAAGATGGGTTGGAACCTGATGGTGTCACCTTCACTGGGGTTTTAGCTGCATGTAGCCATGCTGGACTGGTGGAGGAAGGTTGCAAATATTTTGAGTACATGAAAAGTAAATACAACAGTGAAGTAACCATGAATCATTATGCCTGCATGGTTGATCTTCTCGGTCGAGCAGCAAAATTGGAAGAAGCCGAGGCTTTGATAAAGGAAGCTCCATTTCAGTCAAAATCTATTCTATGGAAGACTTTCCTTGGTGCTTGCTCTAAGCATGAGAATGCTGAAATAGGAGACAGAATATCTAACATCCTTGCTGATATAGAACTGAATGAACCCTCAACCTATGTTCTACTGTCCAACATTTATGCATCAGCATCAATGTGGAAAAATTGCATAGAGTTGAGAGACAAAATGGTAGAAGGGAGTGTTACAAAGCAACCTGGTAGTAGTTGGATTCAGTTGGCAGCATGGATCAAGAGGTCACATGAACTATATTCTGAGAGATTTTCGATAAACTCAAAGAGTAAAGATGGAAGGAGGAAGGCTAAGATAAGGGACCATCAATTAAGATTTCTTCGAGCATCCAAAGAAAGGAGTTAG 2766 0.4013 MQTKRVPARFSLFFRAHFSNSPNKPMLIRRQQFHSKASPELQNNRGFCFQDCVSLLQHLRDHKDVNCGRTLHSLFLKSALDQDVFVQNNMVRFYGDIGEVKNAQKLFDEIPQPSLVSWTSLVSCYVHVGQHEMGLSLFRGLCRSGMRPNEFGFSVALKACRVMCDPVMGKLIHGLILKSGFDSHSFCSASILHMYADCGDIENSTKVFDGVCFGERCEALWNILLNAYVEMGDVKGSLKLFHEMGHSAVARNHFTYTIIVKLCADVLDVELGRSVHGQTVKIGIENDVVVGGALIDCYIKLKLLDDARVVFQFLEEKDNVAICSLLAGFNQIGKSKEGLALYVDFLCEGNKPDPFTSASVASLCSNLEAELAGTQIHCSVIKLGFKMDSYLGSAFINMYGNFGMISDAYKCFLEVCNKNEICVSAMMNTLIFNSNDLKALELFCGMKEVGIAQSSSSISYVLRACGNLFMLKEARSFHSYMIKNPFEEDCRLGLENALLEMYVRCRAIDDAKLIFKRMPIRNEFSWTTIISGCGELGHFVEALGIFRDMLQYSKPSQFTLISVIQACAEIKALDVGKQAQSYIIKVFLSMKEKDLISWSAMLTAWVQNGYHEEALKHFAEFQTVPIFQVDESILSSCISAASGLAALDIGKCFHSWVIKVGFVVDLHVASSITDMYSKCGNIKDACKFFNTISDHNLVTLTAMIYGYAYHGLGREAIDLFNKATEDGLEPDGVTFTGVLAACSHAGLVEEGCKYFEYMKSKYNSEVTMNHYACMVDLLGRAAKLEEAEALIKEAPFQSKSILWKTFLGACSKHENAEIGDRISNILADIELNEPSTYVLLSNIYASASMWKNCIELRDKMVEGSVTKQPGSSWIQLAAWIKRSHELYSERFSINSKSKDGRRKAKIRDHQLRFLRASKERS 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01588 921 Pfam PPR repeat 524 551 IPR002885 -
Cca04g01588 921 Pfam PPR repeat 116 145 IPR002885 -
Cca04g01588 921 Pfam PPR repeat 596 620 IPR002885 -
Cca04g01588 921 TIGRFAM PPR: pentatricopeptide repeat domain 524 551 IPR002885 -
Cca04g01588 921 TIGRFAM PPR: pentatricopeptide repeat domain 116 150 IPR002885 -
Cca04g01588 921 TIGRFAM PPR: pentatricopeptide repeat domain 220 244 IPR002885 -
Cca04g01588 921 TIGRFAM PPR: pentatricopeptide repeat domain 733 761 IPR002885 -
Cca04g01588 921 TIGRFAM PPR: pentatricopeptide repeat domain 698 731 IPR002885 -
Cca04g01588 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Cca04g01588 921 Gene3D Tetratricopeptide repeat domain 168 335 IPR011990 GO:0005515
Cca04g01588 921 Gene3D Tetratricopeptide repeat domain 419 579 IPR011990 GO:0005515
Cca04g01588 921 Gene3D Tetratricopeptide repeat domain 667 911 IPR011990 GO:0005515
Cca04g01588 921 Pfam E motif 813 875 IPR046848 -
Cca04g01588 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Cca04g01588 921 Pfam PPR repeat family 219 264 IPR002885 -
Cca04g01588 921 Pfam PPR repeat family 696 742 IPR002885 -
Cca04g01588 921 Gene3D Tetratricopeptide repeat domain 580 646 IPR011990 GO:0005515
Cca04g01588 921 Gene3D Tetratricopeptide repeat domain 31 165 IPR011990 GO:0005515
Cca04g01588 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Cca04g01588 921 PANTHER - 143 366 - -
Cca04g01588 921 PANTHER - 215 483 - -
Cca04g01588 921 PANTHER - 53 264 - -
Cca04g01588 921 PANTHER - 472 585 - -
Cca04g01588 921 PANTHER - 585 876 - -
Cca04g01588 921 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 696 730 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01588 Cca-Chr4 23758380 23761971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01588 224 889 Glycoside Hydrolase AT3G49170 29.749 7.17e-102 335