Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01582 ATGGGCACTGACGCAGTGGGAAGCGAAGGGTACTCTCTGCTTAAGGATTTAAGATTGGACATTGAAGTAAAGGACGCAACTTTTTCACTCTGCTTTTGGCTTTATTTCACCGATTCCGCTACATTCCCTGTTACCATCATTCAACAGGTTTACTCTGATATCTCTGAAAGTGCTCCTTTTCTTGTTATTAATGATAATAAGAGAATCATTATGTTACCTGTTCTTCTCTTACATGAAGAAGCTCCTGATACCGGCAATATAAATTCCTGGGAAGAAGTTCCACATGCAACTGTTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAGATCGTATTCAGCTTCAGATTAACGGAGAGATTGTAGGAGAAAAGTCTCTGTGTTCCTTATTAAATAAGGAATCCATTTCAAGTGATTTGAAGAAATTAACTTTGGCAAATGTTGGCGGAGATGGAAATAGTGTACAGGGTTATGTACACAATTTTGAAATATTTCCTATTGTTTCTTCTCTTAAGGATCGCCATTTAAAGGACCCTCCTCTGAAATTATCAATTGATGAATCATCTGCTTCTGAAATTGAAGAAGAAAGTGATGGTGTTTGTGGCATTGTTGGTGGCAAGGCATCTTGTCGTAGGAACTTCTCTTTGGATGTTGTTCTATCAGATGCCTTTGGACAGCCTGTAGATAAGGAGAATGAGCAGGTTTTTGCTTCACTTTTGTATGCTGACACCGGGGCACCAGTGGAGAATACAACTGATAATGAAGCACCCCTTTTAGCTACTTATGATGGAATAGAATTTTCTTCTTGTGAAAGACCGAGTAAGCTTTTGCTGGGACGTGCTTCATTTAAGCTCAAAATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCCTCATCAGATTTTGTGTTCCAAAACTAGGAAATTATCCTTTTCTTGAGACATACTCCCGTCCGATTCGATGTATCTCGAGAAGCCGTAACACAAGATTGTCCACTCTGGTGTGGAAAAGGTCAACTTCAGCTCTTAATTGCCCTAGTTTATCTCAATCTTCAGCTATGGAAGATGGGTCCTTAGAACTTCAGCATTCTTGTCATGAAGCACAAGCCAATCCACTGTTGAAGCGGTTTAGACTTGGACAAGACAAGATATCTGTATCGGTAAAGGCTGACCCCAACTTAGAGCAACCTGATGAAGAATGTAATTCTCATGTCCGGACTGCTAATCAGGTTGAGAATGGGTTTCCAACAAGCTTTGATGGAAGGCCTGCAAACTTCAATGAAGCGGATGGCACTCCATCTGATTCAGAGAGTATAGGGGAGGGAAATTCACCTTTAAATAATATGGGAAGTAGAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTGGCAAGCCTGGTTGAGAGATCTCTCATGCTCAAGGAAATTGCTACCACTGCTTCTGACAAAGAAATTTCAGAATTGGCTCATCATGTGTCACTCTATTCAGGATGTTCACACCATGGAAACCAAATATTAATGGCCAAGAGATTGATAAAAGATGGAACTAGTCTTTGGAATAGAATTTCTCCAAACAATCATCACATTCCTTGGGAGAGTGCAGTGTTTGAGATTGAAGAACAATTCATGAAGATTGCTTCTTGTGGTTCAAGACCTCTCTCACCTCAGGACCTAGATCTTCTGAGAAGGATTGCTGGATGTCAAGAGTACCTAACACAAGAGAATTTTGAGAAGTTGTGGTGTTGGTTGTACCCTGTGGCTTTTATAATATCAAGGGACTGGATAAATCCTATCTGGAATTCAACATCACCAAAGTGGATAGAAGGATTCATAACTAAGGAGGAAGCAGAAGCTTCACTTCAAGGTCCCACAGGATTTCAAGAACCAGGTACTTTTATACTCCGATTCCCTACCTCAAGAAGCTGGCCACACCCAGATGCTGGGAGCCTAGTCGTGACTTATGTCAGCAATGAATACAAACTTCACCACAGGCTACTTTCTATGGATCATGTTTACGGGTAA 2052 0.4059 MGTDAVGSEGYSLLKDLRLDIEVKDATFSLCFWLYFTDSATFPVTIIQQVYSDISESAPFLVINDNKRIIMLPVLLLHEEAPDTGNINSWEEVPHATVDFEFPLEKWVHVGCEVCPDRIQLQINGEIVGEKSLCSLLNKESISSDLKKLTLANVGGDGNSVQGYVHNFEIFPIVSSLKDRHLKDPPLKLSIDESSASEIEEESDGVCGIVGGKASCRRNFSLDVVLSDAFGQPVDKENEQVFASLLYADTGAPVENTTDNEAPLLATYDGIEFSSCERPSKLLLGRASFKLKISQLSSKCDNRLFLIRFCVPKLGNYPFLETYSRPIRCISRSRNTRLSTLVWKRSTSALNCPSLSQSSAMEDGSLELQHSCHEAQANPLLKRFRLGQDKISVSVKADPNLEQPDEECNSHVRTANQVENGFPTSFDGRPANFNEADGTPSDSESIGEGNSPLNNMGSRRYPISDMTIFKYCLASLVERSLMLKEIATTASDKEISELAHHVSLYSGCSHHGNQILMAKRLIKDGTSLWNRISPNNHHIPWESAVFEIEEQFMKIASCGSRPLSPQDLDLLRRIAGCQEYLTQENFEKLWCWLYPVAFIISRDWINPIWNSTSPKWIEGFITKEEAEASLQGPTGFQEPGTFILRFPTSRSWPHPDAGSLVVTYVSNEYKLHHRLLSMDHVYG 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01582 683 ProSiteProfiles Src homology 2 (SH2) domain profile. 616 683 IPR000980 -
Cca04g01582 683 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 8 683 IPR001217 GO:0003700|GO:0006355|GO:0007165
Cca04g01582 683 SUPERFAMILY SH2 domain 611 679 IPR036860 -
Cca04g01582 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 174 IPR013320 -
Cca04g01582 683 Gene3D SH2 domain 602 681 IPR036860 -
Cca04g01582 683 PANTHER SIGNAL TRANSDUCER AND TRANSCRIPTION ACTIVATOR 8 683 - -
Cca04g01582 683 MobiDBLite consensus disorder prediction 436 456 - -
Cca04g01582 683 MobiDBLite consensus disorder prediction 420 456 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Cca04g01582 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01582 04 23667091 23677618 Cca04g01582 04 23667091 23677618 ECH