Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01580 ATGGCTTCTCGTAGTTTGAGTTTACCAACAGCACATATTCCTTCGAGCAGGTTAATTCAGAAGTTCGAAAATTCCAAGGTTTTGTTGTGGCCTTCACGTGCTCATACCAACCCCACGAGAATTTCTTCCTCAATTCGGGCAATGGGTTCCTCTGCTTCTTCCCAGTCACAACATGCAGACAGCATTGAATCTGAAGCAGGAACTGGTACTATTGACTATAAATCTTTAAGCGATGAAGAGTGGAAGAAGCGTCTAACAAATGAACAATTCTATATTACTCGTCAAAAGGGAACTGAAAGAGCTTTCACTGGGGAGTACTGGAATACTAAAACCCAAGGGACATACCATTGCATATGTTGTGACACACCTTTATTTGAATCATCTACTAAGTTCAATAGTGGAACAGGGTGGCCATCCTATTACCAACCTATTGGGAACAATGTGAAGTCAAAGTTGGATTTGTCAATTATTTTCATGCCCCGTCAGGAAGTTCTTTGTGCTGTTTGTGATGCTCATCTTGGACATGTGTTTGACGATGGTCCTCCACCCACAGGAAAGCGTTTCTGTATCAATAGCGCTGCCCTTAAGCTCAAACCAAGGCAGTAG 606 0.4257 MASRSLSLPTAHIPSSRLIQKFENSKVLLWPSRAHTNPTRISSSIRAMGSSASSQSQHADSIESEAGTGTIDYKSLSDEEWKKRLTNEQFYITRQKGTERAFTGEYWNTKTQGTYHCICCDTPLFESSTKFNSGTGWPSYYQPIGNNVKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRFCINSAALKLKPRQ 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01580 201 Pfam SelR domain 80 199 IPR002579 GO:0033743
Cca04g01580 201 Gene3D Peptide methionine sulfoxide reductase. 68 201 - -
Cca04g01580 201 SUPERFAMILY Mss4-like 76 200 IPR011057 -
Cca04g01580 201 MobiDBLite consensus disorder prediction 40 64 - -
Cca04g01580 201 ProSiteProfiles Methionine-R-sulfoxide reductase (MsrB) domain profile. 78 200 IPR002579 GO:0033743
Cca04g01580 201 PANTHER METHIONINE-R-SULFOXIDE REDUCTASE B1 31 200 - -
Cca04g01580 201 TIGRFAM TIGR00357: methionine-R-sulfoxide reductase 76 200 IPR002579 GO:0033743
Cca04g01580 201 PANTHER METHIONINE SULFOXIDE REDUCTASE 31 200 IPR028427 GO:0006979|GO:0016671|GO:0030091
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01580 Cca-Chr4 23611208 23614847 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01580 04 23611208 23614847 Cca04g01580 04 23611208 23614847 ECH