Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01577 ATGCTGGCCAGTGATCCTGCAAAAAAGCTTTCGTTTAATCGGTCAATTGGTAATGGAGATTTGGTTATTGTTTATGAAAGGCATGACAACATGAAGGCTGTAACAGTGTCTGAGGGATCAGTCCTGCAGAATCGATTTGGTGTTTTTAAGCATTCTGACTGGATTGGAAAGCCATTTGGGTCCAAAGTATTCAGCAACAAGGGTGGTTTTGTGTACTTGTTAGCACCTACACCAGAATTGTGGACACTTGTTTTAAGCCACAGGACTCAGATTCTATATATTGCTGATATTAGCTTTGTTGTCATGTACCTGGAGATTGTTCCTGGTTGCTTGGTTCTTGAATCTGGAACTGGAAGTGGATCATTAACTACTTCACTTGCAAGGGCAGTGGCTCCTACAGGACATGTCTATACATTTGATTTTCATGAGCAAAGGGCTGGATCAGCTAGGGATGATTTTGAGAGGACTGGTCTAAGCAATTTAGTAACTGTGGGAGTTAGGGACATTCAGGGTGAGGGGTTTCCTGATGAGTTCACTGGTTTGGCTGATGCAGTATTTTTGGATCTACCTCAGCCTTGGCTAGCTATTCCTTCAGCTGCAAAAATGTTAAAACAAGATGGCACATTGTGTTCATTCTCACCGTGTATTGAACAAGTTCAACGATCTAGTGAAGTGCTTCAAACCAGCTTTACTGATATAAGGACTTTTGAGGTACTCCTACGCACATATGAAGTCCGAGAAGAGAAATCAGAAAGCATACAGGGGAATGGCTCTAATGGTTCACTTCCTTGCAAGAGGAGACAGTGTTCAGATGGAGGCAGTGTGATCAGTAGTCCTGTTTCATCTGTTATGGAACCGTCGACGGGTTCTCTACCTCCGGCCATTGGAAATCTAACTCGTATGCAATACATGACCCTTGGCATCAATAATTTATCAGGGAAACTTCCAAAGGAATTGGGAAATCTTACAGAGTTGATAGTATTGAATTTTGGGACAAACAATTTCTCAGGATCTCTCCCATCTGAACTTGGGAAACTGACCAAGTTAGAACAACTCTACTTTGATAGTTCAGGAATTAGTGGTCCAATTCCTTCCACATTTGCAAACCTTAGGAATTTGGTAGTAGTATGGGCTTCAGACGTGGAACTCACAGGCAAGATACCAGACTTCATAGGGAATTGGTCTAAGCTCCAAACATTGAAGTTTCAGGGCAATTCTTTTTATGGCTCAATACCCTCATCATTTTCCAATTTGACTTCTTTAACAGAACTGAGAATAAGTGGTTTATCTAATGGGAGCTCCACATTGGAATTTGTAAGGAATATAAAATCTTTAACTATCTTAGAACTGAGGAATAACAATATTTCTGGTTCAATTCCATCCACTATTGGAGAGTTTCAAAATTTGACTCTGCTGGATTTTAGCTTCAATAACATCACAGGACAAATTTTGGGATCTGTTCCTGTGCTAGGATACACACTCCAATTATCCTTGTTGTAG 1500 0.4073 MLASDPAKKLSFNRSIGNGDLVIVYERHDNMKAVTVSEGSVLQNRFGVFKHSDWIGKPFGSKVFSNKGGFVYLLAPTPELWTLVLSHRTQILYIADISFVVMYLEIVPGCLVLESGTGSGSLTTSLARAVAPTGHVYTFDFHEQRAGSARDDFERTGLSNLVTVGVRDIQGEGFPDEFTGLADAVFLDLPQPWLAIPSAAKMLKQDGTLCSFSPCIEQVQRSSEVLQTSFTDIRTFEVLLRTYEVREEKSESIQGNGSNGSLPCKRRQCSDGGSVISSPVSSVMEPSTGSLPPAIGNLTRMQYMTLGINNLSGKLPKELGNLTELIVLNFGTNNFSGSLPSELGKLTKLEQLYFDSSGISGPIPSTFANLRNLVVVWASDVELTGKIPDFIGNWSKLQTLKFQGNSFYGSIPSSFSNLTSLTELRISGLSNGSSTLEFVRNIKSLTILELRNNNISGSIPSTIGEFQNLTLLDFSFNNITGQILGSVPVLGYTLQLSLL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01577 499 PANTHER TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE CATALYTIC SUBUNIT TRMT61A 3 258 - -
Cca04g01577 499 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 16 246 IPR029063 -
Cca04g01577 499 ProSiteProfiles tRNA (adenine(57)-N(1)/adenine(58)-N(1) or adenine(58)-N(1)) (EC 2.1.1.219 or EC 2.1.1.220) family profile. 19 297 IPR014816 GO:0016429|GO:0030488|GO:0031515
Cca04g01577 499 PANTHER TRNA (ADENINE(58)-N(1))-METHYLTRANSFERASE 3 258 IPR014816 GO:0016429|GO:0030488|GO:0031515
Cca04g01577 499 SUPERFAMILY L domain-like 288 486 - -
Cca04g01577 499 Gene3D Ribonuclease Inhibitor 289 498 IPR032675 -
Cca04g01577 499 CDD AdoMet_MTases 112 209 - -
Cca04g01577 499 Pfam tRNA methyltransferase complex GCD14 subunit 69 254 IPR014816 GO:0016429|GO:0030488|GO:0031515
Cca04g01577 499 Gene3D Vaccinia Virus protein VP39 78 288 IPR029063 -
Cca04g01577 499 Gene3D - 10 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01577 Cca-Chr4 23347616 23359980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01577 301 487 Receptor kinase-like Gene Family AT1G56120 58.824 6.52e-65 224