Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01574 ATGCAATACATGACCTTTGGCATCAATAATTTATCAGGGGAGCTTCCAAAGGAATTGGGAAATCTTACAGAGTTAATAGTATTGAGTTTTGGGTCAAACAAGTTCTCAGGATCTCTTCCATCTGAACTTGGGAAACTAACAAAGTTAGAACAACTCTACTTTGATAGTTCAGGAATTAGTGGTCCAATTCCTTCCACATTTGCAAACCTTAGGAATTTGGTGACAGTATGGGCTTCAGACATGGAACTCACAGGCAAAATTCCAGACTTCATTGGGAGTTGGTCTAAGCTTCAAACCTTGAGATTTGAGGGAAACTCTTTTAATGGATCATTACCCTCATCATTTTCCAATTTGACTTCTTTGACAGAATTGAGAATAAGTGGTTTATCTAATGGGAGCTCCTCGCTGGAATTTGTAAGGAATATGAAATCTTTGACTATCTTAGAATTGAGGAATAACAATATTTCTGGTTCAATTCCATCTACCATTGGAGAATTTCAAAATTTGACTCAGTTGGATTTAAGCTTCAATAACATCACAGGACAAATTCTGGAATCAATTTTCAATCTGAGCTCGCTCTCTTACTTGTTTCTTGGAAATAATAAACTTAGTGGCACCCTCCCGACGCAGAAAAGTTCATCTCTTCGAAATATAGACTTGTCATACAATAATCTATCAGGTAGCCTCCCCACTTGGGTAAACGAACAAAATTTACAACTGAATTTAGTTGCCAACAACTTGACAATAGATGGTTCAAATACCAGTGGCTTGCCTATTGGAATCAACTGTCTCCAGAAAAATTTTCCTTGTAATAGAGGTGCTGGAAGATATTATGACTTTGCAATCAAGTGTGGCGGTAACCAAATTAGGTCAACAGATGGAACAGTGTATGAAATGGACAATGCAACACTTGGGCCTGCTACATACTTTGTTACTGATACAGATAAATGGGCTGTTAGTAACGTTGGATTATTCACGGGTAGCAATAATCCTGTATTCAAAAGTTCTGTGTCTAATCAGTTCACTGGTACTGTGAACCCGGAGCTCTTCCAAACAGCACGACTCTCTGCTTCATCGTTAAGATATTATGGTCTGGGACTAGAAAATGGCTTTTACAACATCACCCTTCAATTTGCTGAAACAGCTATTCTGGATAGTACTAACACATGGAAAAGCCTTGGGAGGCGGGTCTTTGATATTTATATTCAGGGGACTCGTGTTTTGAAGGATTTTGACATACAAAAGGAAGCTGGGGGCGTCTCATACAGAGCTGTCCAAAAACAATTTAGGTTTGAAGTGTCAGAAAACTATCTCGAGATCCATCTCTTTTGGGCTGGAAAAGGGACTTGCTGCATACCTGCTCAAGGTACTTATGGGCCTTTGATTCAAGCCATCCATGCTATCCCAGATTTCATACCTAGTGTCAGTAACAAACCGCCAAGCAATAAAAAGAATAGAACCGGTCTAATTGTTGGAATTGTTATTGGAGTTGGAGCTGTTTGCTTTCTATCAGTTTTTGCAATTTTTTGTATCATTCAGAGAAGAAAACGCCATGATGATAATGAAGAACTTTTAGGAATTGATACAAAGCCATACACTTTCAGCTATTCTGAGTTAAAAAATGCTACAAATGACTTTAATGTTGAAAATAAGCTTGGTGAGGGAGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAGTTATTGCTGTGAAACAACTATCTGTGGGATCCCATCAAGGAAAAAGCCAATTCATAACTGAGATTGCTACTATATCAGCTGTGCAACATCGTAATCTGGTCAAATTATATGGATGTTGCATTGAAGGGAGTAAAAGGCTTCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTATTTGGAAATTGTTTAACCCTCAATTGGTCCACACGCTATGATATATGCTTGGGTGTTGCTAGAGGTTTAACTTACTTACATGAAGAGTCACGTCTCCGTATTGTACACCGTGATGTGAAGGCCAGTAATATTTTGCTTGATTATGAGCTTATTCCCAAAATATCTGATTTTGGCTTGGCCAAATTGTATGATGATAAAAAGACCCATATAAGCACCCGTGTGGCTGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTTACAGAGAAAGCAGATGTCTTTTCCTTTGGTGTTGTGGCTTTAGAGTTAGTAAGTGGAAGGCTAAATTCTGATTCAAATTTGGAAGGAGACAAAGTGTATCTTCTTGAATGGGCTTGGCAACTTCATGAGAACAATCAGATAATTGATCTGGTGGATCCTAGACTTTCAGAATTCAATGAGGAAGAAGTAAAACGTGTTGTAGGAATAGCACTTTTGTGTACTCAAACATCACCAACATTACGACCATCAATGTCACGTGTGGTAGCAATGCTTTCAGGAGATATTGAAGTGAGCACTGTGACTACAAGGCCTGGATACCTAACTGATTGGAAATTTGAAGATGTGTCCAGCAGCTTGATAACTGACTTTGCAATGAAAGGATCTGATACAAGTTACCAGAATTCATCAGGAAGCACCAGCATGATGGGTGGTTCAGACTTGTATTCACCAATAAATGTGTCTAAACCGATCCATAACGAGACTCTTAGCCAGGGTAGATAA 2667 0.3888 MQYMTFGINNLSGELPKELGNLTELIVLSFGSNKFSGSLPSELGKLTKLEQLYFDSSGISGPIPSTFANLRNLVTVWASDMELTGKIPDFIGSWSKLQTLRFEGNSFNGSLPSSFSNLTSLTELRISGLSNGSSSLEFVRNMKSLTILELRNNNISGSIPSTIGEFQNLTQLDLSFNNITGQILESIFNLSSLSYLFLGNNKLSGTLPTQKSSSLRNIDLSYNNLSGSLPTWVNEQNLQLNLVANNLTIDGSNTSGLPIGINCLQKNFPCNRGAGRYYDFAIKCGGNQIRSTDGTVYEMDNATLGPATYFVTDTDKWAVSNVGLFTGSNNPVFKSSVSNQFTGTVNPELFQTARLSASSLRYYGLGLENGFYNITLQFAETAILDSTNTWKSLGRRVFDIYIQGTRVLKDFDIQKEAGGVSYRAVQKQFRFEVSENYLEIHLFWAGKGTCCIPAQGTYGPLIQAIHAIPDFIPSVSNKPPSNKKNRTGLIVGIVIGVGAVCFLSVFAIFCIIQRRKRHDDNEELLGIDTKPYTFSYSELKNATNDFNVENKLGEGGFGPVYKGTLNDGRVIAVKQLSVGSHQGKSQFITEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNCLTLNWSTRYDICLGVARGLTYLHEESRLRIVHRDVKASNILLDYELIPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRLNSDSNLEGDKVYLLEWAWQLHENNQIIDLVDPRLSEFNEEEVKRVVGIALLCTQTSPTLRPSMSRVVAMLSGDIEVSTVTTRPGYLTDWKFEDVSSSLITDFAMKGSDTSYQNSSGSTSMMGGSDLYSPINVSKPIHNETLSQGR 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01574 888 Pfam Leucine rich repeat 144 203 IPR001611 GO:0005515
Cca04g01574 888 Gene3D Transferase(Phosphotransferase) domain 1 622 824 - -
Cca04g01574 888 Gene3D Ribonuclease Inhibitor 1 246 IPR032675 -
Cca04g01574 888 Gene3D Phosphorylase Kinase; domain 1 508 621 - -
Cca04g01574 888 SUPERFAMILY Protein kinase-like (PK-like) 529 844 IPR011009 -
Cca04g01574 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 665 677 IPR008271 GO:0004672|GO:0006468
Cca04g01574 888 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 867 - -
Cca04g01574 888 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 867 - -
Cca04g01574 888 SUPERFAMILY L domain-like 5 247 - -
Cca04g01574 888 Pfam Malectin domain 279 465 IPR021720 -
Cca04g01574 888 Pfam Protein tyrosine and serine/threonine kinase 548 813 IPR001245 GO:0004672|GO:0006468
Cca04g01574 888 SMART serkin_6 546 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01574 888 CDD STKc_IRAK 552 813 - -
Cca04g01574 888 Gene3D - 278 469 - -
Cca04g01574 888 ProSiteProfiles Protein kinase domain profile. 546 819 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01574 Cca-Chr4 23221894 23236177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01574 1 888 Receptor kinase-like Gene Family AT1G56120 63.371 0.0 1160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01574 PK_Tyr_Ser-Thr 9.8e-47 CL0016