Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01564 ATGGGATCCACCACATCCCTCAACGACCTCCCTCCGCTCAAGAGACTCAGACTCATGCAACAACAAGAACACGATTTCGAGTCTTCACCTTTACCCACCAAAAAACGCAAGGAGTCGCGAACCCAATCTACACCCTCTCCCACTAGAACCTTCTATAACCACTCCCTCCCAGCCAAAAAACGCGTGTGGGccccgcagccccaagccccgcccccaaacgacgccgttcccgccttcgacctaaacgccgacccctcccccgactccgactccgactcagacGACGGCGTTTTGTGCTGCGTCTGCCAGAGCACCGACGGCGACCCTGCCGACCCCATCGTCTTCTGCGACGGCTGCGACCTCATGGTGCACGCCTCCTGCTACGGCAACCCCCTGGCGCGGTCCATCCCCGACGGAGACTGGTTCTGCGAACGGTGCCGTTTCGGGGGGAGCCGCGACGACGTCGTGCGGTGCGAGCTCTGTCCCGCGAGGGAGGGGGCGGTGAAGCGGTGCACGCGCGAGGGCGCGTGGGCTCACGTGGTGTGCGCGCTGTTCGTGCCCGAGGTGTTCTTCCGCGACCCCGAGGGGAGGGAGGGGATCGACTGCTCCATGGTGCCGGAGAGGAGGTGGGCCCAGAGGTGCTACGTTTGTGGGCTCTGCGACGGGTGTGGGCTTGTCTGCTCCGAGCCCAAGTGTGGGCTGGGCTTTCATGTCACGTGCGCGCTCAAGGAGGAGCTCTGGATGGAGTACAGGGAGGGGAAGAAGGGGGACACCGTCGTTGCGGGCTTCTGCAAAACGCACACTCGAATGTGGGAAAAGCAACAGCAATCCGGGAAGTACAAAATTGTAGCCGTTGAAGATGAAAAGTAG 870 0.5506 MGSTTSLNDLPPLKRLRLMQQQEHDFESSPLPTKKRKESRTQSTPSPTRTFYNHSLPAKKRVWAPQPQAPPPNDAVPAFDLNADPSPDSDSDSDDGVLCCVCQSTDGDPADPIVFCDGCDLMVHASCYGNPLARSIPDGDWFCERCRFGGSRDDVVRCELCPAREGAVKRCTREGAWAHVVCALFVPEVFFRDPEGREGIDCSMVPERRWAQRCYVCGLCDGCGLVCSEPKCGLGFHVTCALKEELWMEYREGKKGDTVVAGFCKTHTRMWEKQQQSGKYKIVAVEDEK 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01564 289 MobiDBLite consensus disorder prediction 1 94 - -
Cca04g01564 289 Pfam PHD-finger 99 147 IPR019787 -
Cca04g01564 289 CDD PHD_BRPF_JADE_like 98 146 - -
Cca04g01564 289 SUPERFAMILY FYVE/PHD zinc finger 87 162 IPR011011 -
Cca04g01564 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 150 IPR013083 -
Cca04g01564 289 Pfam PHD-zinc-finger like domain 157 267 - -
Cca04g01564 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 270 IPR013083 -
Cca04g01564 289 PANTHER PHD FINGER PROTEINS 72 286 - -
Cca04g01564 289 ProSiteProfiles Extended PHD (ePHD) domain profile. 155 268 IPR034732 -
Cca04g01564 289 SMART PHD_3 213 268 IPR001965 -
Cca04g01564 289 SMART PHD_3 98 147 IPR001965 -
Cca04g01564 289 ProSiteProfiles Zinc finger PHD-type profile. 96 149 IPR019787 -
Cca04g01564 289 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 72 286 - -
Cca04g01564 289 MobiDBLite consensus disorder prediction 18 42 - -
Cca04g01564 289 ProSitePatterns Zinc finger PHD-type signature. 99 146 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01564 Cca-Chr4 22847314 22849958 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01564 9 289 C2H2 Transcription Factor Family AT3G14740 46.364 1.26e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca04g01564 zf-HC5HC2H_2 6.8e-25 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01564 04 22847314 22849958 Cca04g01564 04 22847314 22849958 ECH