Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01558 ATGGAAATATCAAATGATTCAGGTACTAAGAAATCCaaaaggctgacatctgtcgtctggaatcactttgaaagggttagaaaggctgacatctgctatgctgtctgtgtgcattgtaaaaagaaacttagtggatcaagtaacagtggaactactcatttGAGAAATCACTTGATGCGATGTCTGAAAAGATCAAACTTTGATGTATCTCAACTGCTTGCGGCAAAGAGAAGGAAGAAAGACAATACCATCAGCCTAGCAAACATTAGTTTTGATGAAGGTCAGAGGAAAGAAGAATATATAAAGCCAACAATCATCAAGTTTGAACAGGAGCATAAAAAAGATGAAATCATTAACTTTGGAAGTAGTAAATTTGATCAGGAAAGGAGTCAACTTGATCTTGCACGCATGATCATATTACATGGATACCCATTGAGCTTGGTTGAACAAGTAGGATTCAAGGTCTTTGTGAAGAACCTCCAGCCTCTCTTTGAATTTCTTCCAAACAGTTCTGTAGAGATTTCTTGTATGGAAATCTACAGGAGGGAGAAGGAGAAAGTATTTGATATGATAAACAGACTACATGGTAGGATTAATCTGTCTATCGAAATGTGGTTGTCAACAGAAAATTCCTCGTATTTGTGTCTATCTGCTCATTATATTGATGAGGAATGGACATTACAGAAGAAAATCCTGAACTTTGTCACACTTGATTCTTCTCATACTGAAGACTTACTTCCAGAAGTGATTATCAAATGTCTCAATGAATGGGATATTGACTGCAAGCTTTTTGCCTTGACACTTGATGATTGTTCCATCGATGATGACATCACTCTTAGAATCAAGGAGCGAGTTTCTGAGAAAAGGCCTTTTTTAAGTACTCGACAATTACTTGACATACGCTCTGCAGCACATCTCATAAATTCCATTGCTCAAGATGCCATGGATGCATTACATGAGGTGATCCAAAAGATTCGAGAGAGCATAAGATATATTAGAAGTTCGCAAGTATTGCAAGGAAAATTTAATGAAATTGCTCAACATGCTAGGATTAACACTCAGAAGCTCTTATTTCTTGATTTTCCAGTTCAGTGGAAGTCTACATATCTCATGCTGGAAACTGCGCTAGAATACCGCAGTGCTTTCTCTCTCTTCCAAGAACATGATCCCTCCTATTCATCAACTCTAACTGATGAGGAGTGGGAATGGGCTAGTTCTGTTACTGGATACTTAAAACTTTTAGTTGAAATTACCAATGTATTTTCAGGCAACAAATTTCCTACAGCTAATATATATTTCCCTGAGATTTGTGATGTCCATATTCAATTAATTGACTGGTGCAGAAGTTCAGATAATTTTCttagtcccatggctttgaagatgaaagccaaatttgacaagtactggaacaagtgtagtttggctttagctgtagctgcagtcctagatccccggttcaagatgaagttggttgagtactactactccctaatttatggcagcactgcTCTGGAGCGTATCAAGGAAGTTTCTGATGGTATCAAAGAGCTTTTTAATGCGTATTCCATCTGTTCAACTATGATTGATCAAGGCTCAGCCTTGCCTGGCAGCAGTTTACCTAGTACTAGTTGTAGTTCTAGAGATAGGTTAAAAGGCTTTGACAGATTCCTTCACGAGACATCACAGAGTCAGTCtatgacttcagacttagacaagtatttagaggaaccaatctttcctcgtaattcggattttaacatattgaactggtggaaagtccacatgccaaggtacccaattttgtctatgatggcacgtgatgttctaggtactccaatgtcaactctggcaccggaattggcatttagcactgggggcagagtgctagattcttctcgtagttcactaaactcagatacacgtgaggctttaatatgcactcaagattggctcagaaatgaatctggagATATACTAAATCCATCCCCAATCCACTCTGCTGTACCTCTTCTCATCGAATGA 2022 0.274 MEISNDSGTKKSKRLTSVVWNHFERVRKADICYAVCVHCKKKLSGSSNSGTTHLRNHLMRCLKRSNFDVSQLLAAKRRKKDNTISLANISFDEGQRKEEYIKPTIIKFEQEHKKDEIINFGSSKFDQERSQLDLARMIILHGYPLSLVEQVGFKVFVKNLQPLFEFLPNSSVEISCMEIYRREKEKVFDMINRLHGRINLSIEMWLSTENSSYLCLSAHYIDEEWTLQKKILNFVTLDSSHTEDLLPEVIIKCLNEWDIDCKLFALTLDDCSIDDDITLRIKERVSEKRPFLSTRQLLDIRSAAHLINSIAQDAMDALHEVIQKIRESIRYIRSSQVLQGKFNEIAQHARINTQKLLFLDFPVQWKSTYLMLETALEYRSAFSLFQEHDPSYSSTLTDEEWEWASSVTGYLKLLVEITNVFSGNKFPTANIYFPEICDVHIQLIDWCRSSDNFLSPMALKMKAKFDKYWNKCSLALAVAAVLDPRFKMKLVEYYYSLIYGSTALERIKEVSDGIKELFNAYSICSTMIDQGSALPGSSLPSTSCSSRDRLKGFDRFLHETSQSQSMTSDLDKYLEEPIFPRNSDFNILNWWKVHMPRYPILSMMARDVLGTPMSTLAPELAFSTGGRVLDSSRSSLNSDTREALICTQDWLRNESGDILNPSPIHSAVPLLIE 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01558 673 PANTHER ZINC FINGER BED DOMAIN-CONTAINING PROTEIN RICESLEEPER 1-LIKE 6 655 - -
Cca04g01558 673 Pfam BED zinc finger 17 60 IPR003656 GO:0003677
Cca04g01558 673 SUPERFAMILY beta-beta-alpha zinc fingers 17 64 IPR036236 -
Cca04g01558 673 PANTHER BED FINGER-RELATED 6 655 IPR045259 -
Cca04g01558 673 SUPERFAMILY Ribonuclease H-like 189 653 IPR012337 -
Cca04g01558 673 ProSiteProfiles Zinc finger BED-type profile. 14 69 IPR003656 GO:0003677
Cca04g01558 673 Pfam Domain of unknown function (DUF4413) 422 521 IPR025525 GO:0003677
Cca04g01558 673 Pfam hAT family C-terminal dimerisation region 569 651 IPR008906 GO:0046983
Cca04g01558 673 SMART bed5 14 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01558 Cca-Chr4 22608936 22613126 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01558 04 22608936 22613126 Cca04g01558 04 22608936 22613126 ECH