Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01556 ATGAGAAGAGTCTCGGTGGCGCTTCTGAGGCGAGCTTCCCCGCATCAGCATCAGCACCACCACCACAATGCGCGACGCCGCGACTGCTCCTCCCTCCCTCCGCCGGAAGTGGTGGAGCCCTTCTGCGACCTCTCCGACGTCGTTTCGCCCCCTCAACGCTCCCCGTGGCTCCCCCAAATCCTGGCCCTCCTCGACGGCTCCCCCTCGATGGAGTCCAACCTCGACTCCTTCTGCCGCCGCTTCCTCATCACCCTCTCCCCCTCCTTCGTCTCCCACACACTCCGCTCGCTCTCGGATCCCCACATCGCCACGCGCTTCTTCTCATGGGCCGCGACCCAGCCCAACTACTCCCACTCCCTCGACTGCCACGTGTCCCTCCTCCCCCTCCTCCCCCCCGACGCCCTCCCCCGCGCCCTCCTCTCCCTCCGCCGCGCCCGCCTCCCCCTCACCCTCCCCGCCGCCCTCTCCCTCGCCAAAACCCTCGCCGCCGCCGCCCTCGTCGACGACCTCCTCTGGCTCCTCCGCGCCATGCGGGAGGCCAACCTCCCGCCCTCGCTCCTCGCGCACAACTCCCTCCTCAACGCGCTGGTCAACGCCTCCCTCGTCGACTCCGCCCAGCGCGTGCTCTCCGCCATGCGCGACGGCGCGTGCCCCACCAAACCCGACCTCGTCAGCTACAACACGCTCCTCAAGGGGCTCTGCAAGGCGGGGAGAACGCGTTCCGCGTTCGCCACCCTCCGCGAAATGGAGGACGAAAACATCCTCCCCGATGAGATCACTTACATGACCCTGATTCAGGCGTGTTACAACGAGGGCGACGTGGACTCCGTTTTGAGGCTCTACCATGAGATGGAGGATAGGGGAATTGCAGTTCCTCCTCACGCTGTTAGTTTAGTGGTGTGTGGGTTGTGCAAGGAGGGGAAGGTTCTGGAGGGTTGTGCTGTGTTTGAGAGTATGGTTAGGAAAGGTTGTAGGGCTCATAAGGCGGTTTACACCGCGATAATTGATGGTTATGCCAAGAGTGGGAGCTTGGAGAAGGCCATGGCGTTTTTCGAGAGGATGAAGGTGGATGGGGTGGAGCCGGATGAGGTTACTTATGGGGCTGTTGTTGGTGGGTTGTGTAAGAGTGGGAGAGTGGAGGAGGCTATGGAGTGTTTAAGGTTTTGTAAGGGGAATGGCATGGCGGTGAATGCCGTGTTTTATTCGAGTTTGATTGATGGGCTTGGGAAGGCGGGGAGGGTGGATGAGGCGGAGAGGCTGTTTGAGGAGATGGTGGAGGACGGGTGTCCGCAGGATTCCTATTGTTATAATGCTCTTATGGATGGTATGTGCAAGAGTGGGAGGGTTGATGAGGCTTTGGTGTTGTATAGGCGGATGGAGCGGGAGGGGTGTGAGCAGACTGTTTATACCTATACTATACTCATTAGTGAGCTTTTCAAGGAGAGGAGGAATGAGGAGGCGTTGAAGCTGTGGGATGAGATGATTGACAAAGGCGTCACGCCGAATGTGGCGTGTTTTAGGGCGCTTTCGATTGGATTGTGTCTCTCAGGGAAGGTTGCGAGGGCGTGCAGGGTGTTGGATGAGCTGGCCCCCATGGGGATTGTGTTGGATACGGCTTATGAGGACATGATTGGTGTGCTGTGCAAGGCTGGTCGTGTGAAGGAAGCCTGCAAGTTGGCTGATGGAATTGTGGATAGGGGTAGGGAAATACCGGGAAAGATTCGAACTGTGCTTATTAATGCCTTGAGGAAGGCAGGTAATGCAGATTTGGCGATAAAGTTGATGCATAGCAAGATTGGTATTGGGTATGACCGAATGCGTAGTGTTAAAAGGAGAGTGAAGTTCCAAACCCTCCTTGATGGTTGA 1866 0.582 MRRVSVALLRRASPHQHQHHHHNARRRDCSSLPPPEVVEPFCDLSDVVSPPQRSPWLPQILALLDGSPSMESNLDSFCRRFLITLSPSFVSHTLRSLSDPHIATRFFSWAATQPNYSHSLDCHVSLLPLLPPDALPRALLSLRRARLPLTLPAALSLAKTLAAAALVDDLLWLLRAMREANLPPSLLAHNSLLNALVNASLVDSAQRVLSAMRDGACPTKPDLVSYNTLLKGLCKAGRTRSAFATLREMEDENILPDEITYMTLIQACYNEGDVDSVLRLYHEMEDRGIAVPPHAVSLVVCGLCKEGKVLEGCAVFESMVRKGCRAHKAVYTAIIDGYAKSGSLEKAMAFFERMKVDGVEPDEVTYGAVVGGLCKSGRVEEAMECLRFCKGNGMAVNAVFYSSLIDGLGKAGRVDEAERLFEEMVEDGCPQDSYCYNALMDGMCKSGRVDEALVLYRRMEREGCEQTVYTYTILISELFKERRNEEALKLWDEMIDKGVTPNVACFRALSIGLCLSGKVARACRVLDELAPMGIVLDTAYEDMIGVLCKAGRVKEACKLADGIVDRGREIPGKIRTVLINALRKAGNADLAIKLMHSKIGIGYDRMRSVKRRVKFQTLLDG 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01556 621 Gene3D Tetratricopeptide repeat domain 251 319 IPR011990 GO:0005515
Cca04g01556 621 Gene3D Tetratricopeptide repeat domain 59 250 IPR011990 GO:0005515
Cca04g01556 621 Gene3D Tetratricopeptide repeat domain 320 389 IPR011990 GO:0005515
Cca04g01556 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Cca04g01556 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Cca04g01556 621 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 12 620 - -
Cca04g01556 621 TIGRFAM PPR: pentatricopeptide repeat domain 298 325 IPR002885 -
Cca04g01556 621 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Cca04g01556 621 TIGRFAM PPR: pentatricopeptide repeat domain 401 432 IPR002885 -
Cca04g01556 621 TIGRFAM PPR: pentatricopeptide repeat domain 364 387 IPR002885 -
Cca04g01556 621 TIGRFAM PPR: pentatricopeptide repeat domain 469 503 IPR002885 -
Cca04g01556 621 TIGRFAM PPR: pentatricopeptide repeat domain 434 465 IPR002885 -
Cca04g01556 621 TIGRFAM PPR: pentatricopeptide repeat domain 259 290 IPR002885 -
Cca04g01556 621 TIGRFAM PPR: pentatricopeptide repeat domain 330 363 IPR002885 -
Cca04g01556 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Cca04g01556 621 Pfam PPR repeat family 432 479 IPR002885 -
Cca04g01556 621 Pfam PPR repeat family 221 269 IPR002885 -
Cca04g01556 621 Pfam PPR repeat family 330 375 IPR002885 -
Cca04g01556 621 Gene3D Tetratricopeptide repeat domain 484 617 IPR011990 GO:0005515
Cca04g01556 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Cca04g01556 621 MobiDBLite consensus disorder prediction 10 31 - -
Cca04g01556 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Cca04g01556 621 Gene3D Tetratricopeptide repeat domain 390 483 IPR011990 GO:0005515
Cca04g01556 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Cca04g01556 621 SUPERFAMILY TPR-like 259 563 IPR011990 GO:0005515
Cca04g01556 621 Pfam PPR repeat 393 425 IPR002885 -
Cca04g01556 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Cca04g01556 621 Pfam PPR repeat 298 324 IPR002885 -
Cca04g01556 621 Pfam PPR repeat 543 564 IPR002885 -
Cca04g01556 621 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Cca04g01556 621 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 12 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01556 Cca-Chr4 22578913 22580861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01556 222 603 Glycosyltransferase AT1G05670 28.708 1.98e-51 187