Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01553 ATGTGCATCCAAATGAGAACTCCTTCTCCTTCTCCTCTCACGCTTCTTATCTGCAACCTATTCTTATTATCACTCTTCTCTCAAATTTCACATGCAACTGACACCATCACCCAGGACCAGCCACTCTCCGAGGGCACAACCTTGGTTTCGAGAGACGGAACCTTCGAGTTGGGTTTCTTCAACCCGGGAGCCTCCAACAACCGCTACGTGGGAATATGGTACAAAAACATCGCTGTCAGAACCGTTGTTTGGGTCGCCAACCGCGACAACCCTATCAAAGACAACTCCACCAACGCCAGGTTACTCATAACCCAACATGGAAACCTCGTAGTCCGCACCGACAACGACACTCTCCTCTGGACAACAAACGCAACCACGAAGCTTTCGAATCCAATTGCGCAGCTCTTGGACACGGGAAACTTGGTGATAAGAGATGCCAAGGAAGAGAGCGTTTTGGTGTGGCAAAGCTTTGACTTTCCTTGCGACACGCTTTTATCGGGAATGAAGCTTGGGTGGGACCTGAGAAGGGGTCTTAACCGGCGTCTTACTTCTTGGAGAAACTGGGACGACCCATCTTCGGGGAACTTGGTTTTGGAAGTGACGTTAGGAAGCAATCCTGAAATTGTGACATGGAAGGGTGGCGTTGAGTACTTCAGGACTGGGCCTTATAATGGGCTTCAGTTCAGTGGAGTCTACGGGCCCAGGAACAACCCGCTTTACGATTACGTCTTTGTCAACAACCAAGACGAAGTCTACTTCCAATACATCCTCAGGAATAGTTCCGTTGTTTCTTTAATCGTCATGAACCAAACCCTTAGTCTTCGTCAACGTCTCACTTGGATTCCCGAAACAAAGACTTGGACCGTTTACCAGTCCTTGCCGCGGGATAGTTGTGATGTTTACAACGTTTGTGGGCCCAATGGGAACTGCCTCATTGCTGGGTCGCCCATTTGCGAGTGTTTAGAGGGGTTTGGGCCGAAGTCGGCCCAGCAGTGGAACGCGATGGACTGGAGGCAAGGGTGTGTGCGCAGTGGAGAGTGGAGGTGTGGGGTTAAAGATAAAGATGGGTTTCGTAGGATTGGTAGTATGAAATTGCCGAATACTACGTTTTCTTGGGTTAATGAAAGTATGACACTTGAGGAGTGCAGGGTCAAGTGTTTGAAAAATTGTTCGTGCACGGCTTATTCGAACTTGGACACGAGGGGAAGAGGTAGTGGGTGTTCCATTTGGGTTGGTGATCTTATTGATTTGAGGGTTGTAGAAAGTGGGCAAGATTTATATGTTCGAATTGCAACTTCGGATACGGATGGTAAACATGGGAATCAGAAAAAGGTTGTCGTGGTAGCGGTTGCTATCGTAGCTTCGTTGGTCTCTCTGATGTTATTGGCATTCTGTATTTATATGACCAGAAAAAGATATAAAGGAAAAACAAGAACAAGAATGTTAACGGAGCAAAAAGATCAAGGAGGACAAGAAGATTTGGAGCTTCCTTTTTTTGATCTTGCCACGATAGTTAACGCTACTAACAACTTTTCAATTGATAATAAGCTTGGTGAAGGTGGTTTTGGACCTGTATATAAGGGTATATTAGTAGACGGACAAGAAATAGCAATCAAGCGACTTTCAAGAAGTTCAGGACAAGGATTGAAAGAATTTAGGAATGAAGTTACATTGTGTGCCAAACTCCAACACCGAAATCTTGCTAAGGTTATTGGTTATTGCATTGAAGGAGAGGAAAAAATGTTACTCTATGAATACATGCTGAATAAAAGTCTTGATTTAATTATTTTTGATTCCATTCAAAGAAAATTTTTAGATTGGCCAATGCGCTTGAACATTTTGAATGCAATTGCTCGGGGACTTCTTTATCTTCATCAAGATTCTATATTAAGGATCATACACAGGGATTTGAAAGCAAGTAACATTTTATTAGACAATAATATGAATCCAAAAATTTCAGATTTTGGTCTTGCTAGAATGTGTGGAAGCGATCAAGTTGAAGGGAGTACAAGCATCATAGTTGGAACACATGGTTACATGGCACCGGAATATGCCATTGATGGACTATTCTCTATAAAATCAGATGTGTTCAGCTTTGGAGTTTTATTGCTAGAAATTGTTAGTGGAAAGAAAAATAGAGTATTTACCTACCAAGACCACGATCATAATCTCATTGATCAAGCATGGAAATTGTGGAAAAATGGTACTCCAGAGAAATTGATTGATGTTTGTTTGGAAAACTCATGTAATATATTTGAAGTTGTGCGATGCATTCAAATTAGTCTTCTATGTCTACAACATCATCCAAACGATAGGCCGAACATGACATCAGTTGTTGTGATGTTGACTAGTGAAAATGTTTTGCCTGATCCCAAAGAGCCTGGTTTCTTAATTCGAAGGGTCTCAAATGAAGGAGAACAATCTTCTAATAGACAAATTTCTTCGATCAATGAAGTAACTGTCGCTGAGCGGATTTGTCTCTTTCCTGTTCACTCTGTTTTAATTCTATCACATATATAA 2520 0.423 MCIQMRTPSPSPLTLLICNLFLLSLFSQISHATDTITQDQPLSEGTTLVSRDGTFELGFFNPGASNNRYVGIWYKNIAVRTVVWVANRDNPIKDNSTNARLLITQHGNLVVRTDNDTLLWTTNATTKLSNPIAQLLDTGNLVIRDAKEESVLVWQSFDFPCDTLLSGMKLGWDLRRGLNRRLTSWRNWDDPSSGNLVLEVTLGSNPEIVTWKGGVEYFRTGPYNGLQFSGVYGPRNNPLYDYVFVNNQDEVYFQYILRNSSVVSLIVMNQTLSLRQRLTWIPETKTWTVYQSLPRDSCDVYNVCGPNGNCLIAGSPICECLEGFGPKSAQQWNAMDWRQGCVRSGEWRCGVKDKDGFRRIGSMKLPNTTFSWVNESMTLEECRVKCLKNCSCTAYSNLDTRGRGSGCSIWVGDLIDLRVVESGQDLYVRIATSDTDGKHGNQKKVVVVAVAIVASLVSLMLLAFCIYMTRKRYKGKTRTRMLTEQKDQGGQEDLELPFFDLATIVNATNNFSIDNKLGEGGFGPVYKGILVDGQEIAIKRLSRSSGQGLKEFRNEVTLCAKLQHRNLAKVIGYCIEGEEKMLLYEYMLNKSLDLIIFDSIQRKFLDWPMRLNILNAIARGLLYLHQDSILRIIHRDLKASNILLDNNMNPKISDFGLARMCGSDQVEGSTSIIVGTHGYMAPEYAIDGLFSIKSDVFSFGVLLLEIVSGKKNRVFTYQDHDHNLIDQAWKLWKNGTPEKLIDVCLENSCNIFEVVRCIQISLLCLQHHPNDRPNMTSVVVMLTSENVLPDPKEPGFLIRRVSNEGEQSSNRQISSINEVTVAERICLFPVHSVLILSHI 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01553 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Cca04g01553 839 SUPERFAMILY Protein kinase-like (PK-like) 494 803 IPR011009 -
Cca04g01553 839 Pfam PAN-like domain 349 417 IPR003609 -
Cca04g01553 839 ProSiteProfiles PAN/Apple domain profile. 349 431 IPR003609 -
Cca04g01553 839 ProSiteProfiles EGF-like domain profile. 294 330 IPR000742 -
Cca04g01553 839 SMART ntp_6 352 430 IPR003609 -
Cca04g01553 839 CDD PAN_AP_plant 352 431 - -
Cca04g01553 839 Gene3D Transferase(Phosphotransferase) domain 1 587 789 - -
Cca04g01553 839 Pfam S-locus glycoprotein domain 218 328 IPR000858 GO:0048544
Cca04g01553 839 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 41 821 - -
Cca04g01553 839 Gene3D Phosphorylase Kinase; domain 1 469 586 - -
Cca04g01553 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 191 IPR036426 -
Cca04g01553 839 Pfam Protein tyrosine and serine/threonine kinase 512 780 IPR001245 GO:0004672|GO:0006468
Cca04g01553 839 SMART blect_4 39 160 IPR001480 -
Cca04g01553 839 Pfam D-mannose binding lectin 81 186 IPR001480 -
Cca04g01553 839 CDD B_lectin 39 160 IPR001480 -
Cca04g01553 839 Gene3D Hepatocyte Growth Factor 349 431 - -
Cca04g01553 839 ProSiteProfiles Bulb-type lectin domain profile. 33 156 IPR001480 -
Cca04g01553 839 Gene3D - 27 157 IPR036426 -
Cca04g01553 839 ProSiteProfiles Protein kinase domain profile. 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01553 839 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 41 821 - -
Cca04g01553 839 CDD STKc_IRAK 517 783 - -
Cca04g01553 839 PIRSF SRK 5 825 IPR024171 GO:0004674
Cca04g01553 839 SMART serkin_6 511 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01553 Cca-Chr4 22536242 22542772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01553 440 809 Receptor kinase-like Gene Family AT4G05200 50.943 7.49e-122 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01553 Pkinase 1.2e-43 CL0016