Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01551 ATGTCTTCTTCCTCCCTTGAACTCATCCTCACCAGCTCCCCTGACGGCCCCATCATAACTTATGAGGCCGTCACTGGTACCACCGTGGCCAAATTCTCTGGTAGTCGAATACCGTGTAGAGGTTTGGCCACGGTGAACCGGGGACTGATCGCGGCCTCACATGTGTCATTGGACACGGGTGCAGGCTGGATCAATGTTTACAATTGGTATGGTTCTACTGCATTCCACAACTTTCCTGTGCCTGAACCTGTTGCTCCACTCATTGCTTACCCTGATGGAGAATTTCTCTTTGCTGGTGGCATATCAGGGAGTGTTTTTTGTCTCTCGGTTTCTTCTGGGGAAGTGATCAGATCATATGCAGCACACTCAAAAGCAGTTTCCAGTCTTCATTTGAGTGATGATCGGTCACTTGTTATTTCAGGTAGTGAAGATGGCACAATTGTTGTTGTCCCAACCTTTAAGGTTGTTGTTGAGGCCTTCACTGAGGAAGACTTGATCTTCCACAAGTGGAAGGCCCATTCTGATTCAGTCACTGCTTTCAACTCTGGGATGGGTACTTTGGTTTCTTGCTCAATGGATTGCACATGTAAGTTTTGGAGTCAGGGAAGTAATGGGGACCTCATAAGGACTGTGGCATTTCCATGTGCTATTTTTGGGGTTGCATTGGATTCATTAGGGTTAGGGTTTCATGCTGCTGGGGCAGATGGGTTGGTTTATGAGGGGGTAGTGAAGGATGAGAGCATGGAATCACTAGGTGGAGGCTATGAGGTGAATGCTTGGTCTAAGAGACATGGTGGATCAATTGTGTCATTGGCTTTGTTAAATGAAGGGAAGAATTTGGTGTCTGCTTCAGAAGATGGGAATGTGTGGGTGTGGGATGTTGAGAAAGGTGAAGTGACAATGGTTTTGGGGAATGAAATGGTGAGCATTAGTGACATGATTGTGGCCAAGGGTAGTGGTGACTTTGGAGTTAGAAAGGGAAATAATATTGAAGTTGGGGATGGAAGTAGTGGGTTCTTCACTTCTTCTGGGTTGTGTCATGAAGAGATGATTAAGACTATGAAGCAAATCACTGAGATTGAGGAGGATTGGGATGTGTTGGTACAAAACAAGAAAAGGGCAATTGAAATGTTGGAATCTGCAATTGAAACTTATGAGAGGCTTTTGAAGCTTATTCTTAAGGAAGCTACCAAAGCCATTGAAGTGGGggaagaggaagaagaggaagaggaacaagtgaaagatgatgggaagaaggaagaTAATTAA 1269 0.4318 MSSSSLELILTSSPDGPIITYEAVTGTTVAKFSGSRIPCRGLATVNRGLIAASHVSLDTGAGWINVYNWYGSTAFHNFPVPEPVAPLIAYPDGEFLFAGGISGSVFCLSVSSGEVIRSYAAHSKAVSSLHLSDDRSLVISGSEDGTIVVVPTFKVVVEAFTEEDLIFHKWKAHSDSVTAFNSGMGTLVSCSMDCTCKFWSQGSNGDLIRTVAFPCAIFGVALDSLGLGFHAAGADGLVYEGVVKDESMESLGGGYEVNAWSKRHGGSIVSLALLNEGKNLVSASEDGNVWVWDVEKGEVTMVLGNEMVSISDMIVAKGSGDFGVRKGNNIEVGDGSSGFFTSSGLCHEEMIKTMKQITEIEEDWDVLVQNKKRAIEMLESAIETYERLLKLILKEATKAIEVGEEEEEEEEQVKDDGKKEDN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01551 422 ProSitePatterns Trp-Asp (WD) repeats signature. 280 294 IPR019775 -
Cca04g01551 422 PANTHER WD-REPEAT PROTEIN 18 1 406 IPR045227 -
Cca04g01551 422 MobiDBLite consensus disorder prediction 400 422 - -
Cca04g01551 422 Gene3D - 2 158 IPR015943 GO:0005515
Cca04g01551 422 Gene3D - 159 239 IPR015943 GO:0005515
Cca04g01551 422 PANTHER OS09G0477800 PROTEIN 1 406 - -
Cca04g01551 422 Pfam WD domain, G-beta repeat 168 200 IPR001680 GO:0005515
Cca04g01551 422 Pfam WD domain, G-beta repeat 264 293 IPR001680 GO:0005515
Cca04g01551 422 Pfam WD domain, G-beta repeat 114 149 IPR001680 GO:0005515
Cca04g01551 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
Cca04g01551 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 302 IPR001680 GO:0005515
Cca04g01551 422 SMART WD40_4 112 151 IPR001680 GO:0005515
Cca04g01551 422 SMART WD40_4 254 293 IPR001680 GO:0005515
Cca04g01551 422 SMART WD40_4 163 200 IPR001680 GO:0005515
Cca04g01551 422 Gene3D - 245 321 IPR015943 GO:0005515
Cca04g01551 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 298 - -
Cca04g01551 422 SUPERFAMILY WD40 repeat-like 6 314 IPR036322 GO:0005515
Cca04g01551 422 Coils Coil 368 413 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01551 04 22498101 22499615 Cca04g01551 04 22498101 22499615 ECH