Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01539 ATGTGGTTTCTAATCATGTCTCGGTCCAAACTAGTCTATGCTCTAATCTTGGGGTTTGTGGCTTTGAATTGCGTCCAAGTTTTTGAATCCAATGCTCAACTCATACCGCAAGATGAAGTGAAAACACTACAAGCAATATCGGATAAACTGGAAAACTTGAATTGGAAAGTCACAGAACGTTCCTGCATAGAAGATGGAGGCTTTAATGGCAAGATTAATATAAATAATGACACTGTGAGGAATGTCACATGCAATTGCAATTTCCAAAATAGGACAGTTTGCCATGTTGATAACATCTATCTCAAGCGTCAAAATATATCTGGATTTTTCCCCAGTGAATTTGGAAATCTCACACAACTGAAAGTACTCGATCTTACTCGCAACTATCTCAGTGGCCCACTTCCAACGAGTTTTGGTCCCAATTCACTGGTCATTTTGTCCCTTTTGGGAAACCGACTAAGTGGTCAAATTCCAGCAGAAATTGGTAATATTGCTAGTCTAGAAGAGCTGGTCTTAGAAAGTAATCAACTTGTAGGACCACTTCCTCCTAGTCTTGGAAATTTGAGCAAGTTGAAGAGACTGTTTCTTTCTGCAAATAATTTTACAGGGACCATACCAGAAACATTTAGCAAACTAACGAATCTCACTAATTTTAGGATAGATGGAAACAGTTTGTCGGGACCAATACCCAGTTTCATTGGGAAATGGACCAAACTTACAAGATTGGATATGCAGGGAACATCTATGGAAGGCCCAATTCCTACCACTATATCTCAATTGACACTTTTGACTGACTTGAGAATAACCGATTTGAGTGGACCAACTATGACATTTCCAGATCTGAAGAATTTGAAACTCTTGCAACGACTGGAATTGAGAAATTGCTTAATCACTGGTCCCATTCCAGACGAAATCGGTGAACTGACAAACTTGGCTACTTTAGACCTAAGCTTCAACATGTTGACTGGTCCAATTCCAGATTCAATACAGGGATTGAACTACCTATACTACTTGTTTCTGACAAATAATTCTCTGAGTGGACCAATTCAGGACTGGATACTGAGCTTCAAACATAACATAGATTTATCTTACAACAATTTTACCAAGTCTACTGCAACTGGTTGTCAGCAGTTGGATGTGAACCTGGCTTCAAGTCATTCTTCTTCAGCGGTAACTTCGGCTTCAACTTTTTGTTTGAAGAGGGACCTTCCCTGTGCAGGAAAACCCCAGTATAAGTCATTGTTCATAAATTGTGGAGGAGAAGAGGGGGAATTTGAAGGCAATAACTATGTAGGTGACCTCCAGCCAGATGGCACTTCAAATTTTGTTCTTAGAAATGATGGACAATGGGCTTATAGCAGCACAGGAGTATATTTGGGAAATGCTAATAGAGATTATATAGCACAAAATACGTTTTCTTTGAATATTAGTGGTCCAGATTACTACCAAAATGCTCGCCTTTCCCCTGTTTCACTTAACTACTATGGTCTTTGTCTGCCAAAGGGCAATTATAAAGTGAAGCTCCATTTTGCTGAGATAATGTTTTCTGATGATCAAACTTTTAACAGTCTAGGAAGGCGCATATTTGATGTTTCAGTTCAAGGTATTAGATATTTGAAAAATTTTAACATTGCGGAAGCGGCTGGTGGAGTTGGAAAGGGCATCACTAAGGAATATGATGTTGATGTTGATGATGGCACCTTGGAAATCCACTTATACTGGGCAGGGAAAGGAACTGCTGCAATTCCTGATAGAGGTGTATATGGACCTCTTATATCTGCTATTGAGATGATACCAAACTTTGAAGATCCTTCAAAAGGGTTGTCTGCTGGTGCTATTGTTGGAATTGTTGCTGCATCATGTGGGTTTGTCATATTAATACTAGTTGCACTTTGGAAGATGGGTTTCATTGGTAGGAAAGATACAACAGATAAAGAACTTCTAGAAATGAAAACGGGTTATTTCAGCTTAAGACAAATTAAAGCAGCTACTAATAACTTTGACCCTGCAAATAAGATAGGTGAAGGAGGATTTGGTCCTGTATACAAGGGTGTGCTGTCAGATGGTGATGTGATTGCTGTTAAGCAGCTCTCATCCAAATCGAAGCAAGGGAACCGTGAATTTGTAAATGAAATTGGAATGATATCTGCTTTGCAGCATCCAAATCTGGTGAAGCTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTACTAATATATGAATACATGGAGAATAACAGTCTTGCTCGTGCACTTTTTGGTGAGCAAGAACAAAAGTTGCACTTGGACTGGCCCACAAGAATGAGGATTTGTGTGGGGATAGCAAGAGGATTGGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTAGACAAGGATCTGAATGCCAAGATTTCTGACTTTGGTTTAGCTAAGCTTGATGAAGAAGAGAATACTCATATCAGTACAAGGATAGCTGGAACAATTGGTTACATGGCTCCAGAATATGCTATGCGGGGTTACTTGACTGATAAAGCAGATGTATATAGCTTTGGAGTTGTAGCTTTAGAGATTGTCAGTGGAAAAAGCAACACAAAATACAGGCCAAAGGAGGAGTTTGTATATCTTCTAGATTGGGCCTATGTTCTCCAAGAACAAGGAAACCTTCTGGAATTGGTAGATCCAAGTCTTGGTTCAAAGTACTCAGCAGAGGAGGCCATGAGAATGCTGAGCTTGGCACTCTTATGCACCAATCCATCTCCCACTCTTAGACCAACCATGTCATCTGTAGTGAGCATGCTTGAAGGAAAAACTCCGATCCAAGCACCAATAATCAAGCGCAGTGAGAGCAACCAAGATGCAAGATTTAAAGCCTTTGAGTTGCTAGCACAAGACAGCCAAACTCTTGTTTCTTCTGCATTCTCACAGGAAAGTGTGGAGCAAAGACACAAATCAGAAGATGGGCCATGGGTTGACTCCTCCATATCTCTTCCAAGTGGAGATGATTATTCTTCAACCAGTAAACTTCTTTAG 3045 0.4 MWFLIMSRSKLVYALILGFVALNCVQVFESNAQLIPQDEVKTLQAISDKLENLNWKVTERSCIEDGGFNGKININNDTVRNVTCNCNFQNRTVCHVDNIYLKRQNISGFFPSEFGNLTQLKVLDLTRNYLSGPLPTSFGPNSLVILSLLGNRLSGQIPAEIGNIASLEELVLESNQLVGPLPPSLGNLSKLKRLFLSANNFTGTIPETFSKLTNLTNFRIDGNSLSGPIPSFIGKWTKLTRLDMQGTSMEGPIPTTISQLTLLTDLRITDLSGPTMTFPDLKNLKLLQRLELRNCLITGPIPDEIGELTNLATLDLSFNMLTGPIPDSIQGLNYLYYLFLTNNSLSGPIQDWILSFKHNIDLSYNNFTKSTATGCQQLDVNLASSHSSSAVTSASTFCLKRDLPCAGKPQYKSLFINCGGEEGEFEGNNYVGDLQPDGTSNFVLRNDGQWAYSSTGVYLGNANRDYIAQNTFSLNISGPDYYQNARLSPVSLNYYGLCLPKGNYKVKLHFAEIMFSDDQTFNSLGRRIFDVSVQGIRYLKNFNIAEAAGGVGKGITKEYDVDVDDGTLEIHLYWAGKGTAAIPDRGVYGPLISAIEMIPNFEDPSKGLSAGAIVGIVAASCGFVILILVALWKMGFIGRKDTTDKELLEMKTGYFSLRQIKAATNNFDPANKIGEGGFGPVYKGVLSDGDVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGEQEQKLHLDWPTRMRICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGKSNTKYRPKEEFVYLLDWAYVLQEQGNLLELVDPSLGSKYSAEEAMRMLSLALLCTNPSPTLRPTMSSVVSMLEGKTPIQAPIIKRSESNQDARFKAFELLAQDSQTLVSSAFSQESVEQRHKSEDGPWVDSSISLPSGDDYSSTSKLL 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01539 1014 Pfam Leucine rich repeat 166 225 IPR001611 GO:0005515
Cca04g01539 1014 Gene3D Ribonuclease Inhibitor 274 385 IPR032675 -
Cca04g01539 1014 Pfam Malectin domain 413 595 IPR021720 -
Cca04g01539 1014 SMART serkin_6 667 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01539 1014 Gene3D Phosphorylase Kinase; domain 1 633 742 - -
Cca04g01539 1014 PANTHER - 74 999 - -
Cca04g01539 1014 CDD STKc_IRAK 673 940 - -
Cca04g01539 1014 Gene3D - 413 601 - -
Cca04g01539 1014 Gene3D Ribonuclease Inhibitor 38 199 IPR032675 -
Cca04g01539 1014 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515
Cca04g01539 1014 Gene3D Transferase(Phosphotransferase) domain 1 743 961 - -
Cca04g01539 1014 SUPERFAMILY Protein kinase-like (PK-like) 647 939 IPR011009 -
Cca04g01539 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 789 801 IPR008271 GO:0004672|GO:0006468
Cca04g01539 1014 ProSiteProfiles Protein kinase domain profile. 667 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01539 1014 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 999 - -
Cca04g01539 1014 Gene3D Ribonuclease Inhibitor 200 273 IPR032675 -
Cca04g01539 1014 MobiDBLite consensus disorder prediction 977 1014 - -
Cca04g01539 1014 SUPERFAMILY L domain-like 94 368 - -
Cca04g01539 1014 Pfam Protein tyrosine and serine/threonine kinase 671 937 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01539 Cca-Chr4 22247155 22262133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01539 1 1005 Receptor kinase-like Gene Family AT1G53440 60.630 0.0 1221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca04g01539 PK_Tyr_Ser-Thr 5.5e-50 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01539 04 22247155 22262133 Cca04g01539 04 22247155 22262133 ECH