Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01537 ATGGCACCACGAATTTCACCCCTCTTAGTGCTATTCCCTCTCCTCATCATTTCCCTCTTGAGGCTCTCCCACGGCGCGGGAATAGCAGTCTATTGGGGCCAAAACGGCAACGAGGGGTCTTTGGCCGATGCATGCAACACTGGAAACTACCAGTTCGTGAACATAGCGTTTTTGTCCACTTTTGGTGGTGGCCAAAACCCTCAACTGAACCTTGCTGGCCACTGTGACCCCAGCACCAACGGGTGCACCAAATTCAGCGATGAAATCAAAGGGTGCCAAGGCAGGGGCATCAAAGTGCTTCTCTCGTTGGGAGGTGCTAGTGGAAGCTACTCTCTCAACTCAGCTGATGAGGCCACACAGCTTGCTAACTACCTTTGGAATAACTTCCTTGGAGGACAATCTAGCTCTCGCCCTTTAGGTGATGCTGTGTTGGATGGCATAGACTTTGACATTGAGGCTGGTGGTGGTAGCCACTGGGATGAACTTGCAAAGGCCCTTAATGGGTTCAGCTCACAGAAGAAGGTGTACCTAGCAGCAGCCCCTCAGTGTCCAATCCCTGATGCTCACTTGGACTCAGCCATCCAAACTGGCCTCTTTGACTATGTGTGGGTTCAGTTCTACAACAACCCTCCATGCCAGTACTCTAGTGGCAACACCAACAATCTCATAAACTCATGGAACCAATGGACCTCAAGCCAGGCCAAGCAACTGTTTTTGGGAGTGCCAGCTTCTACAGCAGCTGCTGGTAGTGGCTTTATTTCTGCTGATGTGTTGACCTCACAGGTTCTTCCTACCATCAAGAGTTCTCCCAAGTATGGTGGAGTCATGATTTGGGACAGGTACAATGATGGTCAAAGTGGATACAGTAATGCTATTAAGGGCAGTGTTTGA 891 0.5017 MAPRISPLLVLFPLLIISLLRLSHGAGIAVYWGQNGNEGSLADACNTGNYQFVNIAFLSTFGGGQNPQLNLAGHCDPSTNGCTKFSDEIKGCQGRGIKVLLSLGGASGSYSLNSADEATQLANYLWNNFLGGQSSSRPLGDAVLDGIDFDIEAGGGSHWDELAKALNGFSSQKKVYLAAAPQCPIPDAHLDSAIQTGLFDYVWVQFYNNPPCQYSSGNTNNLINSWNQWTSSQAKQLFLGVPASTAAAGSGFISADVLTSQVLPTIKSSPKYGGVMIWDRYNDGQSGYSNAIKGSV 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01537 296 Gene3D Glycosidases 26 296 - -
Cca04g01537 296 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 296 IPR001223 GO:0005975
Cca04g01537 296 PANTHER ACIDIC ENDOCHITINASE 14 296 - -
Cca04g01537 296 CDD GH18_hevamine_XipI_class_III 26 294 IPR045321 -
Cca04g01537 296 PANTHER ENDOCHITINASE 14 296 - -
Cca04g01537 296 Pfam Glycosyl hydrolases family 18 28 283 IPR001223 GO:0005975
Cca04g01537 296 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Cca04g01537 296 SUPERFAMILY (Trans)glycosidases 24 292 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01537 Cca-Chr4 22208224 22210184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01537 27 296 Glycoside Hydrolase AT5G24090 62.868 1.01e-129 369