Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01535 ATGGCATACAGAAGGCAAGCTTTGATAATATTTTTGTTACTATCCCTTTTCACATTCTCCTCCGCACACCCCGACAACGGTGGAATCGCCGTGTACTGGGGCCAAGATAGTGGCGAAGGAGATTTGACAACAACATGCGACACTGGAAAGTACGCGGTTGTTGTCCTCTCTTTCCTCCACAACTTCGGTGCAGGCAGAACCCCAACTTTGAACCTCGCTGGCCACTGTGACAATGGTGTCTCCAGAAGGTGCACTGAACTAGAATCTGAAATAAAACACTGTCAGGCCAAAGGCATCAGAGTGCTTCTTTCCATAGGAGGACCCAGCGACAATTCAGACTACTCTCTCACCTCTGCTGAAGACGCAAAAAATGTCGCCAACTACCTCCACACCAACTTCCTCAGCGCCCAGTACGGTCCTCTGGGTCGCGTCACCTTAAACGGCATCAGCTTCGACATCGAAAAATCAGAGGAACACTGGGACAACCTTGCCAAGGAACTCGACACTCTTCGTCGCACAAAAGGCCATTACTTTTTCCTATCCGCAACCCCCCAGTGCCAAATCCCCACCCCCTTTCTCGGTAAAGCCATTGCAACGAATCTCTTCGAATACATCTTCGTCCAGTTCCGCAACAACCCTCTTTGCACCTATTCCAATGGCGACGTGAAGCCAGTGTTGGACACGTGGGACAAGTGGGTGGACTCGGTCCTCCCCAACAACTCGCTCTTCCTGGGCCTCCCCGCGCGTGCCGGAAGCGGCTACATTCCGCCGCACGTGCTGAACAGTCACGTGCTGCCGCATGCGAAGAAAGCATCAAACTACGAAGGGGTGGCGTTGTGGGACAGACAAAGTGATCGTCAAAGCGATTACAGTGGGAACGTGCTGTCCCATGTGCTGAAATCGCCGTTACTATCTGTGACATCCGTTACGGATGCGATCTACGAGTGTGTCTCCAAGGCGTTGCATGGTGCGTTACCCTATGTTGGTAGCTAG 993 0.5237 MAYRRQALIIFLLLSLFTFSSAHPDNGGIAVYWGQDSGEGDLTTTCDTGKYAVVVLSFLHNFGAGRTPTLNLAGHCDNGVSRRCTELESEIKHCQAKGIRVLLSIGGPSDNSDYSLTSAEDAKNVANYLHTNFLSAQYGPLGRVTLNGISFDIEKSEEHWDNLAKELDTLRRTKGHYFFLSATPQCQIPTPFLGKAIATNLFEYIFVQFRNNPLCTYSNGDVKPVLDTWDKWVDSVLPNNSLFLGLPARAGSGYIPPHVLNSHVLPHAKKASNYEGVALWDRQSDRQSDYSGNVLSHVLKSPLLSVTSVTDAIYECVSKALHGALPYVGS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01535 330 PANTHER ENDOCHITINASE 4 294 - -
Cca04g01535 330 SUPERFAMILY (Trans)glycosidases 25 294 IPR017853 -
Cca04g01535 330 Pfam Glycosyl hydrolases family 18 29 249 IPR001223 GO:0005975
Cca04g01535 330 Gene3D Glycosidases 25 312 - -
Cca04g01535 330 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 27 301 IPR001223 GO:0005975
Cca04g01535 330 PANTHER III ACIDIC ENDOCHITINASE, PUTATIVE-RELATED 4 294 - -
Cca04g01535 330 CDD GH18_hevamine_XipI_class_III 27 294 IPR045321 -
Cca04g01535 330 Coils Coil 153 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01535 Cca-Chr4 22138328 22140033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01535 1 298 Glycoside Hydrolase AT5G24090 44.408 3.14e-88 265