Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01534 ATGGCATCCAACATGCAAGCATTGGTGATATCTCTCTTGTTATCCCTTTTCACATTCTCCTCCTCAAGCCCCGACAATGGTAATGGTGGCATTGCCATCTACTGGGGCCAAAATAATGGCGATGGCGATTTGATAAGCACATGCGACACAAACAAGTACAAGATTGTGCTTCTAGCTTTCCTCAACAAGTTCGGTGGAGGCAGAATCCCAGCTTGGAATTTCGCTGGTCACTGTGACAACGGTGCCTGGAAAAAGTGCTATGAACTAGAGCCCGAAATAAAACACTGCCAGGCCAAAGGGATCAAAGTGCTCTTATCCATAGGGGGAGCACCTGGGTTTTCGGACTACTCCATCAGTTCTGCTGAGGACGCAAAGATTGTGGCGAACTACCTCTACACGAACTTTCTCAGTGGCCAATTCGGACCACTCGGAAGTGTGACATTGGACGGAATCGATTTCGACATCGAAGTGACAGAAGATCACTGGGACGACCTCGCCAGAGAACTGGACACTCTCCGACGCACCAAAGGGCGTTACTTTCACCTCTCCGCAGCGCCTCAGTGCCCAATCCCAGTTCACTTTCTCGGCAAAGCCATCGCCACGGGTCTCTTCGACTACGTCTTGGTTCAGTTCTACAACAACCCAGAGTGCTCCTACACCGGCAACGTGAAGCCCGTGTTGGACTCCTGGGACAAGTGGGTCAACCTGGTTCGGCCCAATAACTCCCTCTTCCTGGGCCTCCCCGCTGCGCCCAGTGCGGCTTGGATCGGTTACATTGAACCGGAGAAGCTCATTTCGGAGGTGCTTCCGCACGTGAAGAATGCGCCCAACTATGGAGGAGTGATGCTGTGGGACAGATTCCGTGACGTTCAGAATAACTACAGCGGTCAGATACTTCCCTATGTTGTCAAGCTCAAAGACGCTTTGCTCTCTGTCACGGACGCAATCTATGGCTGTGTCTCCAACGCGTTGCACCGCGTCCTAACGTTAAACCCCTATCACTATGTTCCTAATCCTAACTAG 1023 0.5171 MASNMQALVISLLLSLFTFSSSSPDNGNGGIAIYWGQNNGDGDLISTCDTNKYKIVLLAFLNKFGGGRIPAWNFAGHCDNGAWKKCYELEPEIKHCQAKGIKVLLSIGGAPGFSDYSISSAEDAKIVANYLYTNFLSGQFGPLGSVTLDGIDFDIEVTEDHWDDLARELDTLRRTKGRYFHLSAAPQCPIPVHFLGKAIATGLFDYVLVQFYNNPECSYTGNVKPVLDSWDKWVNLVRPNNSLFLGLPAAPSAAWIGYIEPEKLISEVLPHVKNAPNYGGVMLWDRFRDVQNNYSGQILPYVVKLKDALLSVTDAIYGCVSNALHRVLTLNPYHYVPNPN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01534 340 Gene3D Glycosidases 27 312 - -
Cca04g01534 340 PANTHER ENDOCHITINASE 6 298 - -
Cca04g01534 340 PANTHER III ACIDIC ENDOCHITINASE, PUTATIVE-RELATED 6 298 - -
Cca04g01534 340 CDD GH18_hevamine_XipI_class_III 29 300 IPR045321 -
Cca04g01534 340 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 148 156 IPR001579 GO:0004553|GO:0005975
Cca04g01534 340 SUPERFAMILY (Trans)glycosidases 27 299 IPR017853 -
Cca04g01534 340 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 29 312 IPR001223 GO:0005975
Cca04g01534 340 Pfam Glycosyl hydrolases family 18 31 289 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01534 Cca-Chr4 22116729 22118365 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01534 5 302 Glycoside Hydrolase AT5G24090 49.669 1.23e-95 284