Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01529 ATGATGAGGCTTGGCCTGTTCATGGTTTTCTTATCTTCCTTGTTATATGCTATTAATGCATTGAACACTGAAGGGGTGGCTCTACTATCACTCATGAGGCATTGGACATTTGTGCCTCCATCCATAGACATGAGTTGGAATGCTTCTGATTCTACTCCATGCTCTTGGTTAGGAATTCATTGCGATAATAACCACAATGCAGTCTTTCTTAACCTCTCTGGATACTCAATTTCAGGTCTATTAGGACCTGAAATAGCACACTTGAGTCACTTGCAAACACTTGACTTGTCCTCTAACAATCTCTCAGGGAAAATACCTCCTGAGTTAGGAAATTGTAGTCTGCTTCAATATGTAGACCTTTCTTATAACAATATTGCTGGAGAAATACCGGATAGTTTGAGAAACTTGCTGAATTTAGTGTCTTTTGGCTTTATGTACAATATGCTAACTGGTCAAATTCCTGAGTTCTTGTTTCAACTTCAACACTTGGAAGATCTTCTCTTGAACCAAAACCATTTGTCTGGCCCCATTCCAATGAATGTTGGAAACGGGACAAAAATTTTGAGCCTGTATCTAGATAATAATCAGTTGTCAGGAAGAATCCCCCCGTCCATTGGAAACTGCAGTAACTTAGTGCAGTTGTATTTGGAAGAAAACCAATTGCATGGAGTTCTACCTGAAAGTCTTACCAATCTCAAAAGTGTTGTTAAGATAGGTGTCCAAAATAATAGACTTGAGGGTACTATTCCATTATTTGGTTCTGCCAGATGCAAAGGTTTATATTATTTGGACTTGTCATTCAATAAATTTAGTGGGGTCATACCTTCAAGTTTGGGAAATTGCAGTGGATTAACAGAATTTTATGCTCCCAACAATAATTTAGGAGGTAGAATCCCATCATCCTTGGGTCAACTAAGTGAACTTTCTGTTCTTCGCCTTGACACCAATCATTTGTCTGGACAAATACCTTTGGAACTTGGTAATTGTAGGTCCTTAAATGTGTTGGGGTTAAATGAAAATGAACTTGAGGGAGAGATTCCAAGTGAATTAGGAAAGCTAAGTAAATTGCAAGATCTTAGATTGAATAACAACCATTTGAGAGGTGGAATTCCACTGAGTCTTTGGAAAATTTCTAGCCTTGAGAATGTGAATGTGCATTACAATAACCTTTCTGGGGAACTACCTTTGGAATTGACAGAACTCAAACAACTGAAAAATATCACATTGTATAACAACCAATTTACTGGGGTTATTCCTCAAAACTTAGGAATCAATACCAGTTTAGTGCTGTTTGATGTCTCATATAATCACTTCACTGGCACCATACCACCTAATCTTTGCTTTGGACAACAATTAGATAGGTTACTCCTAGTTTCAAATCAATTTCAAGGTGGCATACCTATTGACATAGGGAAATGTACAACTCTTACTAGGTTACGTCTTGATGTTAATAACTTAGCAGGAACTCTACCTGATTTTGAAAGCACTAGCAGTCTCTCCTACATGAACATCAGTGAGAACAAGATCAGTGGACCAATTCCATCAAGTTTGGGAAAGTTCACAAATCTTACTGATGTTGATTTGTCCAACAACAAATTTTCAGGGCACATACCGTCTGAGCTAGGGAGCCTTGTGATTCTTCAGAGGCTGAACCTTTCTCACAACAAGTTGGAAGGTCCTTTGCCACCTGAGCTGTCAAATTGTCACAAAATGGCAGTGTTTGATGCTGGATTCAATTCTCTCAATGGCTCATTGCCATCAAGTTTGAGAAATTGGACAAGGTTAGTTACATTGAATTTAAGAGAAAATCGTTTTACTGGTGGTATCCCAACTTTCTTATCAGAATTTAAGTACCTTTCTGATCTACATCTTGGGGGAAACAATTTTGGAGGCCAAATTCCTAGAACAATTGGTGATTTTCAGAATCTTTTTTATGGATTAAATCTAAGTGCTAATGAGTTGACAGGTGAAATTCCTCCAGAGATTGGGAAACTGAAATTGCTGCAAAGCCTGGATATTTCTCTTAACAATCTGACTGGAAAAATTGATGTTCTTGAAGATCTCTCTTCATTGGTTGCACTCAATATTTCATACAATTCCTTTTATGGTCCTCTTCCAGACAGACTAGTGAACTTGCTCAATTCTTCTCCATCATCATTCTTGGCCAATCCTGGCTTATGTGTTAGATGTTTTCCATTATATGGGCTTCAATGTTCCAAAAATAACACCTTGAAGCCATGTGATGAGAACAATTCCACACATCCAAAGGGGCTGAGTAAAGTTAAAGTTGTGATGATAGCACTTGGATCCACACTAGTTGTAACATTTCTGTTACTTGGTCTTGTTTATGTTCTACACTACAAGCAAGATGTCAAGATTTTCCCTAAACAAAATTCATCTTTCCTCAAAAAAGTGATGAACGTTACAGAGAACCTAAATGATAGGCATATCATTGGAAGAGGAGCACATGGAGTTATCTACAAAGTTGAGTTCAGTTCAGACGAAGTTTTTGCCATAAAGAAAGTCCCCTTTGCGGATAACAAAGGTCAAATCACAAGCATGAGCAGAGAGATTGAAACCGCTGGGAAGATTAAGCATCGAAATTTGTTAACAATAAAAAAGTTTTGGTTAAGAAAGGACTGTGGTCTAATTCTATACAAGTACATGGAAAATGGAAGTCTCCATGATGTTTTGCATGAGAAGTACCCACCACCATCTTTAGAGTGGAGTGTCCGCTATAAGATTGCTATTGGAATTGCACACGGACTTGAATATCTCCATCACGATTCTGATCCTTTCATAGTGCACAGAGACATTAAACCAAAGAATATACTTTTGGATTCTGATATGGAGCCTCATATTGCTGATTTTGGCATTGCCACACTTCTAGACCATTCACATACTTCATTGCAATCTTTATGTGTTCCTGGTACAGTTGGGTACATTGCTCCAGAGAATGCTTATTCAACAGTGATGAGTAGGAAGTCTGATGTGTATAGTTATGGAGTGGTTTTGCTAGAGCTGATAAGCAGAAAGATGGTGCTAGATGATCCTTCATTTATGGAAGAAACAGATCTTGTGGGGTGGGTTAAATCAATGTGGGAAAACACAAGAAGCATTAATGGAATTGTTGATTCGAGCCTTGCAGAGGAATTTTTGGCTTCAGAGGTGAGGAAGCAAGTTGAACAAGTACTTTTGGTGGCATTGAGATGTATTGAGAAGCATCCAAGTGAGAGACCAACAATGAGAGAAGTCGTCAAGGACTTGATTGTTGGATGCAAATGCAGTGAATGA 3294 0.3825 MMRLGLFMVFLSSLLYAINALNTEGVALLSLMRHWTFVPPSIDMSWNASDSTPCSWLGIHCDNNHNAVFLNLSGYSISGLLGPEIAHLSHLQTLDLSSNNLSGKIPPELGNCSLLQYVDLSYNNIAGEIPDSLRNLLNLVSFGFMYNMLTGQIPEFLFQLQHLEDLLLNQNHLSGPIPMNVGNGTKILSLYLDNNQLSGRIPPSIGNCSNLVQLYLEENQLHGVLPESLTNLKSVVKIGVQNNRLEGTIPLFGSARCKGLYYLDLSFNKFSGVIPSSLGNCSGLTEFYAPNNNLGGRIPSSLGQLSELSVLRLDTNHLSGQIPLELGNCRSLNVLGLNENELEGEIPSELGKLSKLQDLRLNNNHLRGGIPLSLWKISSLENVNVHYNNLSGELPLELTELKQLKNITLYNNQFTGVIPQNLGINTSLVLFDVSYNHFTGTIPPNLCFGQQLDRLLLVSNQFQGGIPIDIGKCTTLTRLRLDVNNLAGTLPDFESTSSLSYMNISENKISGPIPSSLGKFTNLTDVDLSNNKFSGHIPSELGSLVILQRLNLSHNKLEGPLPPELSNCHKMAVFDAGFNSLNGSLPSSLRNWTRLVTLNLRENRFTGGIPTFLSEFKYLSDLHLGGNNFGGQIPRTIGDFQNLFYGLNLSANELTGEIPPEIGKLKLLQSLDISLNNLTGKIDVLEDLSSLVALNISYNSFYGPLPDRLVNLLNSSPSSFLANPGLCVRCFPLYGLQCSKNNTLKPCDENNSTHPKGLSKVKVVMIALGSTLVVTFLLLGLVYVLHYKQDVKIFPKQNSSFLKKVMNVTENLNDRHIIGRGAHGVIYKVEFSSDEVFAIKKVPFADNKGQITSMSREIETAGKIKHRNLLTIKKFWLRKDCGLILYKYMENGSLHDVLHEKYPPPSLEWSVRYKIAIGIAHGLEYLHHDSDPFIVHRDIKPKNILLDSDMEPHIADFGIATLLDHSHTSLQSLCVPGTVGYIAPENAYSTVMSRKSDVYSYGVVLLELISRKMVLDDPSFMEETDLVGWVKSMWENTRSINGIVDSSLAEEFLASEVRKQVEQVLLVALRCIEKHPSERPTMREVVKDLIVGCKCSE 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01529 1097 Coils Coil 668 688 - -
Cca04g01529 1097 SUPERFAMILY Protein kinase-like (PK-like) 798 1089 IPR011009 -
Cca04g01529 1097 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 9 251 - -
Cca04g01529 1097 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 285 1089 - -
Cca04g01529 1097 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 210 311 - -
Cca04g01529 1097 ProSiteProfiles Protein kinase domain profile. 812 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01529 1097 SMART LRR_typ_2 208 231 IPR003591 -
Cca04g01529 1097 SMART LRR_typ_2 353 377 IPR003591 -
Cca04g01529 1097 SMART LRR_typ_2 401 425 IPR003591 -
Cca04g01529 1097 SMART LRR_typ_2 520 543 IPR003591 -
Cca04g01529 1097 SMART LRR_typ_2 160 184 IPR003591 -
Cca04g01529 1097 SMART LRR_typ_2 544 568 IPR003591 -
Cca04g01529 1097 SMART LRR_typ_2 88 112 IPR003591 -
Cca04g01529 1097 SMART LRR_typ_2 305 329 IPR003591 -
Cca04g01529 1097 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Cca04g01529 1097 Gene3D Ribonuclease Inhibitor 183 352 IPR032675 -
Cca04g01529 1097 Gene3D Ribonuclease Inhibitor 353 740 IPR032675 -
Cca04g01529 1097 SUPERFAMILY L domain-like 471 727 - -
Cca04g01529 1097 ProSitePatterns Serine/Threonine protein kinases active-site signature. 934 946 IPR008271 GO:0004672|GO:0006468
Cca04g01529 1097 Pfam Leucine Rich Repeat 90 112 IPR001611 GO:0005515
Cca04g01529 1097 Pfam Leucine Rich Repeat 547 568 IPR001611 GO:0005515
Cca04g01529 1097 ProSiteProfiles Leucine-rich repeat profile. 90 112 IPR001611 GO:0005515
Cca04g01529 1097 PANTHER OS08G0446200 PROTEIN 9 251 - -
Cca04g01529 1097 PANTHER OS08G0446200 PROTEIN 210 311 - -
Cca04g01529 1097 PANTHER OS08G0446200 PROTEIN 285 1089 - -
Cca04g01529 1097 SUPERFAMILY L domain-like 34 201 - -
Cca04g01529 1097 Pfam Protein kinase domain 815 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01529 1097 Gene3D Phosphorylase Kinase; domain 1 786 888 - -
Cca04g01529 1097 SMART serkin_6 812 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca04g01529 1097 Gene3D Ribonuclease Inhibitor 21 181 IPR032675 -
Cca04g01529 1097 SUPERFAMILY RNI-like 146 486 - -
Cca04g01529 1097 ProSitePatterns Protein kinases ATP-binding region signature. 818 841 IPR017441 GO:0005524
Cca04g01529 1097 Gene3D Transferase(Phosphotransferase) domain 1 889 1094 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01529 Cca-Chr4 21918631 21922508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g01529 12 1087 Receptor kinase-like Gene Family AT1G73080 49.634 0.0 982
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca04g01529 Pkinase 1.5e-44 CL0016