Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01525 ATGGAATCTGTTAAGCCATCAGCAGCAGTGACACCAAGCAAGAGCAAACTGGCGCGCACTTTTGCCAAAGTTCTTCACGCTAGAGCTGTGTCTGGAATTGCACCAGTTGATGGCCTGAAGAATGTTGAAGTTGATGCAGATCTCAACAGTGAAGCAAATATGTGTAAGAGTACAATAAACAAAGAAGATGAAGAAGAGCTTCAGAAAACAAAGGCCACAGAAGCATTTCTTGCAAAAGTTTTTGCTAGCATTTCAACTGTTAAAGCTTCATATGCTCAGCTACAGAATGCTCAATCTCCTTATGACCCTGATGGAATTCAAGCCTCTGATCAATTGATAGTCTCGGAGTTTAAGACCTTGTCTGAGATAAAGCAATGCTACTTTAAAAACCAATTTGATCCTTCACCAGATAGAGCAATTCTTGAAGCTAAACTGAAGGAACTGGAGAGTGTTAACAGAACCTTTGAGATCACGACGAAGAAGCTAGAATCGCAGGCACGGCTCAAGGAATCCGAGATTATATTTCTCCGTGAAAAGCTAGAGGAAGCTAACATACACAACAGGTCAATTGAGAAGAGGTTATCTCAAAGTGGTTCATTATCAGTTCTTGATAATCTCCATATGTCAGGACTAAGTCCTAGCCATTTTGTCACTGTCCTTCGGCACGCAGTTAGGTCCATTCGAACCTTTGTGAAGTTGTTAGTGAAAGAAATGAGATCTTCTGGTTGGGATATTGATGCTTCAATCAATGCCATCATTGAGCAGAATGTGGTTTACTTGAAAGAAGATCACAAGTGTTTTGCAATTGAGTCCTTTGTTTGTAGGGAGATGTTTGATTCATTCAACACCCCTAATTTCTCTCTACCAAATGAGTCTCTACCAGATAGCAACAAGAGGCAGGTGTTCTTTGGGAGGTTCAATGAGCTGAAACACATTAAAGCAAAGGAGTTTCTTGCATTGAAGCCAAGGTCACCCTTTGCGAAATTCTGCAGGATCAAGTACTCGAGGCTTGTTCACCCCAAGATGGAGGCATCATTTTTTGGTGACCTGAATCAGAGAACCCTGTTGAATGCTGGAGAGTTTCCTGACACAAACTTCTTCACCTCATTTGCTGAGATGGCCAAGAGGGTGTGGCTCCTACACTGCCTAGCCTTTTCTTTTGAGCCTCAAGCTTCAATCTTTCAAGTGGGGAAGGGGTGTAGATTCTCTGATGTGTACATGGAGAGTGTGAATGAGAATGATGAAGAAGTGGCAGTGGAGTCTGAGGCACAAGTTGGTTTCACTGTGGTTCCGGGGTTTAGGATTGGTAAAACTGTTGTACAGTGCCAAGTTTACCTCTCAGAGTCACAGCACCAAGGTAAGGTAAAAAGTCTTACATCCACAAAGCAAAGGTAA 1395 0.4244 MESVKPSAAVTPSKSKLARTFAKVLHARAVSGIAPVDGLKNVEVDADLNSEANMCKSTINKEDEEELQKTKATEAFLAKVFASISTVKASYAQLQNAQSPYDPDGIQASDQLIVSEFKTLSEIKQCYFKNQFDPSPDRAILEAKLKELESVNRTFEITTKKLESQARLKESEIIFLREKLEEANIHNRSIEKRLSQSGSLSVLDNLHMSGLSPSHFVTVLRHAVRSIRTFVKLLVKEMRSSGWDIDASINAIIEQNVVYLKEDHKCFAIESFVCREMFDSFNTPNFSLPNESLPDSNKRQVFFGRFNELKHIKAKEFLALKPRSPFAKFCRIKYSRLVHPKMEASFFGDLNQRTLLNAGEFPDTNFFTSFAEMAKRVWLLHCLAFSFEPQASIFQVGKGCRFSDVYMESVNENDEEVAVESEAQVGFTVVPGFRIGKTVVQCQVYLSESQHQGKVKSLTSTKQR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01525 464 Coils Coil 138 165 - -
Cca04g01525 464 Pfam Plant protein of unknown function (DUF641) 69 193 IPR006943 -
Cca04g01525 464 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 1 446 IPR040225 GO:0009639|GO:0009959
Cca04g01525 464 PANTHER OS01G0203800 PROTEIN 1 446 - -
Cca04g01525 464 Coils Coil 173 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01525 Cca-Chr4 21791086 21795693 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01187 10 15250188 15255796 Cca04g01525 04 21791086 21795693 ECH
Cca04g01525 04 21791086 21795693 Cca04g01525 04 21791086 21795693 ECH