Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01416 ATGGCCACACTCTTCGATTCCCTcgccgtcagtcgcctcccttccgccgccttctcccccgtcgccgcccgccgGACCTCCGTTAAGCTCCCGCACTGCGCCGGCCTCAAGCTCAGACCCGCCGCCACGCGCTTCGTCGCCTCCCCCACTCCCAAAACCGTCTCACGCGCCGCGCGTGTCGCCTGCGAGGCTCAGGATACTGCTGTCGATGTGGCTCCTATTACTGATGCAAATTGGCAATCGCTTGTGCTTGAATCTGAAACTGCTGTTTTGGTTGAATTCTGGGCACCATGGTGTGGTCCCTGCAGAATGATTCACCCTATAATCGATGAACTGGCAAAGCAATATGCAGGGAAGCTCAAGTGTTACAAACTTAACACTGATGAGAGCCCTTCAACTGCTACAAGGTATGGGATTCGAAGCATTCCAACTGTTATGATCTTCAAGAATGGTGAGAAGAAAGATACAGTTATTGGTGCTGTGCCCAAGTCAACATTGACCACGAGCATTGAAAAATTCGTATGA 525 0.4571 MATLFDSLAVSRLPSAAFSPVAARRTSVKLPHCAGLKLRPAATRFVASPTPKTVSRAARVACEAQDTAVDVAPITDANWQSLVLESETAVLVEFWAPWCGPCRMIHPIIDELAKQYAGKLKCYKLNTDESPSTATRYGIRSIPTVMIFKNGEKKDTVIGAVPKSTLTTSIEKFV 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01416 174 CDD TRX_family 77 171 - -
Cca04g01416 174 PRINTS Thioredoxin family signature 90 98 - -
Cca04g01416 174 PRINTS Thioredoxin family signature 98 107 - -
Cca04g01416 174 PRINTS Thioredoxin family signature 138 149 - -
Cca04g01416 174 PANTHER THIOREDOXIN M-TYPE PROTEIN 3 174 - -
Cca04g01416 174 ProSitePatterns Thioredoxin family active site. 91 109 IPR017937 -
Cca04g01416 174 SUPERFAMILY Thioredoxin-like 68 173 IPR036249 -
Cca04g01416 174 Pfam Thioredoxin 71 171 IPR013766 -
Cca04g01416 174 ProSiteProfiles Thioredoxin domain profile. 51 174 IPR013766 -
Cca04g01416 174 PANTHER GEO12009P1 3 174 - -
Cca04g01416 174 TIGRFAM thioredoxin: thioredoxin 75 173 IPR005746 GO:0015035
Cca04g01416 174 Gene3D Glutaredoxin 71 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01416 Cca-Chr4 18710738 18713438 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01416 04 18710738 18713438 Cca04g01416 04 18710738 18713438 ECH