Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00735 ATGGATCCTTCTAGTGGACAACACCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAACAGGATAGGAAGCCAAGGCCTCAGCCAGAGCAAGCTCTGAAGTGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTATAGCCTCTCTCAGCCAAGGTATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGGACACTGAGGAATGTTCCTGTGGGAGGAGGGTGCAGGAAGAACAAGAGGtcatcatcaacatcatcttcaacatcaaagagagttcaagatcaagcattcacacccaatcaCAACCCTCTCACTGGCCTCCCTTCACTGTCTTATGACTCTAATGACCTCACCCTTGCACTAGCAAGGCTTCAAAAGCAGTCATGTGGGCAATTGAGTTATGATGAGCATGACCTTTCAATTTTGGGGAACCCCACAAGCACCCCATGTGACATCCTTGGCAATCATGGCATGAACCCCTCATCCACAAACCCAGGGTTCTTGGATGCCCTTAGAAGTGGGTTCCTTGGAACCCAAAGTAACATGCACAATATGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGGGTTGGGGTTAGTGGAGACATGATGATGCCTTATGATCAAGAAATGAGTATTGCCACCACACAGGCAGTGTCAGTCACTACCATGAAACAAGAACTTTGCAATGGAAGGGAACAAAGTGAGAATAGGGTGTTGTGGGGTTTCCCTTGGCAACTCAATGGAGACACCAACATGGGTGAAATTGACTCAGGGAGAGCTAGTTGGAATGGACTCACACCATCATGGCATGGACTTATCAATAGTCCCCTAATGTAG 906 0.4448 MDPSSGQHQQMSNQSLENMLACSKAQQDRKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSTSSSTSKRVQDQAFTPNHNPLTGLPSLSYDSNDLTLALARLQKQSCGQLSYDEHDLSILGNPTSTPCDILGNHGMNPSSTNPGFLDALRSGFLGTQSNMHNMYYGYGNGDMGEVDNGNACGGVGVSGDMMMPYDQEMSIATTQAVSVTTMKQELCNGREQSENRVLWGFPWQLNGDTNMGEIDSGRASWNGLTPSWHGLINSPLM 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00735 301 MobiDBLite consensus disorder prediction 1 40 - -
Cca04g00735 301 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Cca04g00735 301 MobiDBLite consensus disorder prediction 90 121 - -
Cca04g00735 301 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 7 300 IPR045174 GO:0003700|GO:0006355
Cca04g00735 301 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Cca04g00735 301 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 7 300 - -
Cca04g00735 301 MobiDBLite consensus disorder prediction 1 22 - -
Cca04g00735 301 MobiDBLite consensus disorder prediction 83 121 - -
Cca04g00735 301 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00735 Cca-Chr4 7327650 7330013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00735 1 301 C2C2-Dof Transcription Factor Family AT2G28510 40.000 1.19e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca04g00735 zf-Dof 6.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00735 - - gmx:100799737 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00735 04 7327650 7330013 Cca04g00735 04 7327650 7330013 ECH
Cca10g00487 10 5071983 5073870 Cca04g00735 04 7327650 7330013 PCT