Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00651 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCCCCCAATTGGCAGCAGCAACCAAACCATCCTCAAGCAAATGGCAGTGATAACACTCAGCTTCTTCCACCTTTACCTCCACAACAGCATCATGTGGGAGGTTCTGTGGGTTCAATCAGGCCGGGGTCTATGGCAGATCGAGCTAGGTTAGCTAAGATACCACCTCCAGAAGCAGCTCTCAAGTGTCCACGTTGTGAATCCACCAACACCAAATTTTGCTATTTCAATAACTATAGCCTCTCTCAACCACGCCACTTCTGCAAGACTTGTAGGCGTTATTGGACAAGAGGGGGTGCTCTTAGAAACGTTCCTGTGGGTGGAGGGTGTCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAATCTCCTGCATCATCGGAGAAACAAACACTTTCTGGTTCCTCAAGTTCAATCCCTTCTGCTGGAACCACCACTCACGACCTAAGTGGCCAGTTGCCACAACCTCCTAACCTTCCCTTCATGTCTTCCCTTCACAACCTGAACCGTTATGCTGTTGGAAACATGGGTCTAGGGTTGCGTGATATTCACGAACAGAACAATCACATAGGGTTTCAAATCGGTGGTAATTCTGCAGCTGCTGGGGGAGGAATGGACCAGTGGCGCTTGCAGGAGGTTCCTTTCTTGAACGGTTTTGAATCAGCTTCGGGTGGCTCGTACCCTTTTCAAAATGAAAGTATTGAAGCAGCTTCTGCTTTGGTTGGAAATATCGCTACGAATTCTAGGGTTTCTCAGATGCCATCAGTTAAAATGGAAGAAAGTGGAGCTATGAATTTGTCAAGAGCACCACTGAGTGTCTCAGAAAATAACCAATACTATTCATGGATTGATATGTCAGAGAAATTCTATCTCAAACGATTTGGATGTTCCACTGAACACCTAGCCTTGACTTCCAAGTTCCACTATCATCATCAGCTGACAGAAATTAACGCAGACATGGTAGAATTGATATCTTCTTGTAATTTCAATTCCGGTCATTGA 1032 0.4535 MVFSSIPVFVDPPNWQQQPNHPQANGSDNTQLLPPLPPQQHHVGGSVGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPASSEKQTLSGSSSSIPSAGTTTHDLSGQLPQPPNLPFMSSLHNLNRYAVGNMGLGLRDIHEQNNHIGFQIGGNSAAAGGGMDQWRLQEVPFLNGFESASGGSYPFQNESIEAASALVGNIATNSRVSQMPSVKMEESGAMNLSRAPLSVSENNQYYSWIDMSEKFYLKRFGCSTEHLALTSKFHYHHQLTEINADMVELISSCNFNSGH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00651 343 MobiDBLite consensus disorder prediction 135 171 - -
Cca04g00651 343 ProSitePatterns Zinc finger Dof-type signature. 73 109 IPR003851 GO:0003677|GO:0006355
Cca04g00651 343 MobiDBLite consensus disorder prediction 115 171 - -
Cca04g00651 343 MobiDBLite consensus disorder prediction 11 36 - -
Cca04g00651 343 ProSiteProfiles Zinc finger Dof-type profile. 71 125 IPR003851 GO:0003677|GO:0006355
Cca04g00651 343 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 296 IPR045174 GO:0003700|GO:0006355
Cca04g00651 343 MobiDBLite consensus disorder prediction 11 53 - -
Cca04g00651 343 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 296 - -
Cca04g00651 343 Pfam Dof domain, zinc finger 70 125 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00651 Cca-Chr4 6424626 6425976 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00651 37 292 C2C2-Dof Transcription Factor Family AT3G55370 42.553 2.90e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca04g00651 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00651 - - gmx:100816635 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00651 04 6424626 6425976 Cca04g00651 04 6424626 6425976 ECH
Cca10g00431 10 4429360 4430070 Cca04g00651 04 6424626 6425976 PCT