Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00650 ATGGTTTTCTCCTCTATTCCAGTCTTTGTAGATCCTCCCAATTGGCAGCAGCAACCAAACAATCCTCAAGCAAATGGCAGTGATAACTCTCAGCTTCTTCCACCTTTGCCTCCACAGCAACCTCATGTGGGAGGTTTTGTGGGTTCAATTAGGCCAGGATCTATGACTATGGCAGATCGAGCTAGGTTAGCTAAGATACCACCTCCTGAAGCAGCTCTTAAGTGTCCACGTTGTGAATCCACCAACACCAAATTTTGCTATTTCAATAACTATAGCCTCTCTCAACCACGCCACTTCTGCAAGACTTGTAGGCGCTATTGGACAAGAGAGGGTGCTCTAAGAAACGTTCCTGTGGGTGGAGGGTGCCGCAAGAACAAGAAGAACAAAAGGAGTCACTCTAATAAATCTCCTGCATCATCAGAGAAACAAACACTTTCCGGTTCCAGTCACGAGCTAATAGGCCAGTTGCCTCAATCTCCTAGCCTTCCCTTCATGGCTTCCCTTCACAACCTGAACCGTTATGCTGTTGGAAACATGGGTCTAGGGATGCCTGACATTCATGGACAGAACGATCACACGGGGTTTCAAATTGGTGATGGTGCTGGTAATTCTTCAACTGCTGGTGGAGGAATCAATCAGTGGCGCTTGCAGCAGGTTCCTTTCTTCAACGGTTTTGAATCAACTTCGGTTGCTTCATACCCATTTCAAAATGAAAGTATTGAAGCAGTTTCTGGTTTGGTTGGAGATATGGCTACGAATTCTAGGGTTTCTCAGATGCCATCAGTTAAAATGGAAGAAACTGGAGCTATGAATTTGTCAAGAACACCACTGACTGCCTCAGAAAATAACCAATACTATTCATGGACTGATATTTCAGGTCTTGCCTCTTCTTCCGCTCGTCATGTCTTGTAA 912 0.4518 MVFSSIPVFVDPPNWQQQPNNPQANGSDNSQLLPPLPPQQPHVGGFVGSIRPGSMTMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTREGALRNVPVGGGCRKNKKNKRSHSNKSPASSEKQTLSGSSHELIGQLPQSPSLPFMASLHNLNRYAVGNMGLGMPDIHGQNDHTGFQIGDGAGNSSTAGGGINQWRLQQVPFFNGFESTSVASYPFQNESIEAVSGLVGDMATNSRVSQMPSVKMEETGAMNLSRTPLTASENNQYYSWTDISGLASSSARHVL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00650 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 300 IPR045174 GO:0003700|GO:0006355
Cca04g00650 303 MobiDBLite consensus disorder prediction 117 153 - -
Cca04g00650 303 Pfam Dof domain, zinc finger 72 127 IPR003851 GO:0003677|GO:0006355
Cca04g00650 303 MobiDBLite consensus disorder prediction 11 41 - -
Cca04g00650 303 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 300 - -
Cca04g00650 303 ProSiteProfiles Zinc finger Dof-type profile. 73 127 IPR003851 GO:0003677|GO:0006355
Cca04g00650 303 MobiDBLite consensus disorder prediction 137 153 - -
Cca04g00650 303 MobiDBLite consensus disorder prediction 11 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00650 Cca-Chr4 6407448 6409339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00650 56 288 C2C2-Dof Transcription Factor Family AT3G55370 41.045 3.43e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca04g00650 zf-Dof 6.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00650 - - gmx:100816635 478.018