Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00393 ATGATGCTAGGCGAAGAAGCAGTAAAGGGATCATCAAAGTGTCAAGACTGTGGGAACCAAGCCAAGAAAGATTGTTCATACTCAAGGTGCAGAACTTGCTGCAAGAACAAAGGGTTTAACTGCCAAACTCATATCAGAAGCACTTGGATTCCAGTCGATAGAAGACGCCACAAAGTGGAGCAGCAGCCACTTCCCACTACTAATCTTCTGGGAGATATTATTCCTAAAAGGCACAAGCACAACACATTTTCAAGTTTGGAGGAGTTCAGATTTCCGGCTATTATGAGTTCCACTGCGTTATTCAGCTGCGTGCAGGTGCGCTCTATGGATGACACGGTTAATGAAATCGCGTATCAGACATCTGTGAACATTGGAGGACGTGTATTTAGTGGTCTTCTTTATGATCAAGGCCCTGAACAAAGCTTCAATGCTAGGGGTAACAACATGTCCATAGACCCTTTTGATCAACAACACGATCTCAATCTTAGGAGTGCTTCAATCCATACTCGTGATGGTGCAACTATGCCTCCACTATCAACCACTACTACCCAGGAACTTCTTTTCCCTCCTCCACAACCGTTTCCCCTAGCTTCCTTCAGGCCTGATATGACGTACTTGCCACATCAGAAATCTTAA 636 0.4465 MMLGEEAVKGSSKCQDCGNQAKKDCSYSRCRTCCKNKGFNCQTHIRSTWIPVDRRRHKVEQQPLPTTNLLGDIIPKRHKHNTFSSLEEFRFPAIMSSTALFSCVQVRSMDDTVNEIAYQTSVNIGGRVFSGLLYDQGPEQSFNARGNNMSIDPFDQQHDLNLRSASIHTRDGATMPPLSTTTTQELLFPPPQPFPLASFRPDMTYLPHQKS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00393 211 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 4 200 IPR007818 GO:0003700|GO:0006355
Cca04g00393 211 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 13 55 IPR006510 -
Cca04g00393 211 Pfam Domain of unknown function (DUF702) 11 139 - -
Cca04g00393 211 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 90 138 IPR006511 -
Cca04g00393 211 PANTHER BNAC01G23660D PROTEIN 4 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00393 Cca-Chr4 3969085 3970472 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Cca04g00393 DUF702 2.2e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00393 04 3969085 3970472 Cca04g00393 04 3969085 3970472 ECH
Cca04g00393 04 3969085 3970472 Cca07g00102 07 1359197 1360104 ECH
Cca05g00329 05 7007788 7009757 Cca04g00393 04 3969085 3970472 ECH
Cca07g00102 07 1359197 1360104 Cca04g00393 04 3969085 3970472 ECH