Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00138 ATGTCTCCTCAAACGCTTTTCATTGTCCTCGCTTCATTAGTCTTATGTAATGGCTATTACACAGAGGAATCACTTTATAAAACAAAAAATGCTCAACACTACTACCCTGTGCATAATGGGAGATTGATCAGAACAAAACATGAACATTTTGGTCTCATAACAAGGGCTAATAGAGCCATCCCTCTTTCTTCTAGGCCTCGTGGAACAGTTAGCGTCGATGACTTTGGAGCCAAAGCAGATGGAAGAGATGACAGCCAGGCATTTGGGAAGGCTTGGAATGAAGCATGTTCTAGAGGGGCTATCCTTGTGGTACCTGAAAATAGGATCTATCGTCTTAAGCCAATAACATTTTCTGGTCCATGCCAACCCAACACTGCCTTTATGCTCTATGGAACAATCGAGGCATGGACTCAAATGTCAGCATACCAAGAAGATAGACTACACTGGATCATGTTTGATAGTGTTACAAATTTCAGAGTTGGTGGTGGCGGCACATTCAATGGCAATGGGAAAAAGTGGTGGCAAAACTCTTGCAAAGCCAACACTGACCTTCCATGCAAAGACGAACCAAGACCAAAAGCCGTGACTTTCTTTCAATGCAACAATTTGAAAGTGACCAACCTGAGATTCAAAGATGCACAACAAATGCACGTATCATTTGAGAAATGCTTCAATGTTATTGTTTCAAATGTTGTCATTAGAGCACCAGGGGATAGCCCCAATACTGATGGAATTCATGTCGCAGAGACACAAAATATTGCCATAAGAAACAGTGACATTGGAACAGGTGATGATTGTATTTCAATAATAAGTGGGTCCCAAAACGTTCGAGCCACAGATATCACCTGCGGACCTGGACATGGAATAAGCATCGGAAGCTTGGGAGCTGATAACTCAGAAGCTGAAGTGTCCAATGTGGTAGTGAACAGGGCAACCTTAATAGGAACGACTAATGGAGTGAGAATCAAGACTTGGCAGGGAGGTTCTGGTTACGCAAGAAACATCAAATTTTTGAATATAGCGATGCAAAACGTGACAAATCCCATAATCATAGATCAATACTACTGTGATAGAGCAGAGCCATGTCAAGAACAGGACTCAGGTGTGCAATTAAGCAATGTGTTATACCAAAACATCAGAGGAACAAGTGCCTCAGAAGTGGCCATCAAATTTGACTGCAGCAGAACCGTTCCTTGCAGACAAATCTACGTGCAGGACGTGATTTTAGAACCCCAAGGCAGTGGTGGCACCATTGCCACGTGTCAGAATGTTAGATATGTGAATAGAGGAAAGTTTTTTCCTCAATGCACCCATTGA 1317 0.4252 MSPQTLFIVLASLVLCNGYYTEESLYKTKNAQHYYPVHNGRLIRTKHEHFGLITRANRAIPLSSRPRGTVSVDDFGAKADGRDDSQAFGKAWNEACSRGAILVVPENRIYRLKPITFSGPCQPNTAFMLYGTIEAWTQMSAYQEDRLHWIMFDSVTNFRVGGGGTFNGNGKKWWQNSCKANTDLPCKDEPRPKAVTFFQCNNLKVTNLRFKDAQQMHVSFEKCFNVIVSNVVIRAPGDSPNTDGIHVAETQNIAIRNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLIGTTNGVRIKTWQGGSGYARNIKFLNIAMQNVTNPIIIDQYYCDRAEPCQEQDSGVQLSNVLYQNIRGTSASEVAIKFDCSRTVPCRQIYVQDVILEPQGSGGTIATCQNVRYVNRGKFFPQCTH 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00138 438 Pfam Glycosyl hydrolases family 28 102 425 IPR000743 GO:0004650|GO:0005975
Cca04g00138 438 Gene3D - 61 434 IPR012334 -
Cca04g00138 438 SUPERFAMILY Pectin lyase-like 65 437 IPR011050 -
Cca04g00138 438 ProSitePatterns Polygalacturonase active site. 280 293 IPR000743 GO:0004650|GO:0005975
Cca04g00138 438 PANTHER POLYGALACTURONASE 4 437 - -
Cca04g00138 438 PANTHER - 4 437 - -
Cca04g00138 438 SMART pbh1 250 271 IPR006626 -
Cca04g00138 438 SMART pbh1 332 353 IPR006626 -
Cca04g00138 438 SMART pbh1 303 324 IPR006626 -
Cca04g00138 438 SMART pbh1 223 249 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00138 Cca-Chr4 1295626 1298927 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00138 04 1295626 1298927 Cca10g01722 10 31389098 31403835 PCT