Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02590 ATGGAGAGAGGCTGGAAGGCTAATAATGTTGAGGTTTCACCAAATTGTCCTAGGTGTGGTTCTTCCAATACCAAGTTCTGCTACTACAATAACTACAGTTTAACTCAACCAAGGTACTTTTGCAAAGGTTGCAGAAGGTACTGGACCAGAGGAGGATCCCTTCGCAACGTGCCTATTGGTGGTGGTTGCCGCAAAAGTAGAAGGGGTAAATACAGTAAGACCTCAAGACAAGTCAATAACTCAGTTGTGCATTCTGATGATTTTGGAAGGGCCTCATCTTCAGTGGTGTGCGATGGTCCAAATATTGATCTTGCACAAGTTTATGCAAGTTTTCTCAATAATCAGAAGCCAGATCAAGAGCAAACAGATCATTCCTACCATTCTCCCGAGTATTCAACCCTATTGAACATTGATATTGCTTTGTCTGAAGAACTTGGTCTTAGTGAGTGTCTGCATTTTCATGATCAATCCACAGAATCCCATTTCGGTGAGAGTGTCCAAATGTACTCGTGCAGGTTCAACTCTATCCAGAAGCATCAAGAATATAGTAACAGTTATGATACTACCACAAATACAAATTTTGAGTTGCCACCGTTGCCAGGTGATGATATGCTGTGGTCCGATTCTGAGATAATGGTAGATCATGCTTTGCAAGCCACCCAACCACCCCTTTTTGGACCTGAAACTCACGATGCAGACTTCTTATTGGCCAATTGTTGGACCCACTTCGATTTGCCAAGGGATGCTTCTTTTTCCACGCCCTGA 765 0.4301 MERGWKANNVEVSPNCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTRGGSLRNVPIGGGCRKSRRGKYSKTSRQVNNSVVHSDDFGRASSSVVCDGPNIDLAQVYASFLNNQKPDQEQTDHSYHSPEYSTLLNIDIALSEELGLSECLHFHDQSTESHFGESVQMYSCRFNSIQKHQEYSNSYDTTTNTNFELPPLPGDDMLWSDSEIMVDHALQATQPPLFGPETHDADFLLANCWTHFDLPRDASFSTP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02590 254 Pfam Dof domain, zinc finger 15 68 IPR003851 GO:0003677|GO:0006355
Cca03g02590 254 ProSiteProfiles Zinc finger Dof-type profile. 14 68 IPR003851 GO:0003677|GO:0006355
Cca03g02590 254 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 1 250 - -
Cca03g02590 254 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 250 IPR045174 GO:0003700|GO:0006355
Cca03g02590 254 ProSitePatterns Zinc finger Dof-type signature. 16 52 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02590 Cca-Chr3 47268739 47269674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02590 5 249 C2C2-Dof Transcription Factor Family AT3G52440 39.777 5.26e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca03g02590 zf-Dof 7.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02590 - - gmx:778109 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02590 03 47268739 47269674 Cca03g02590 03 47268739 47269674 ECH
Cca03g02590 03 47268739 47269674 Cca02g00645 02 14725397 14726868 PCT