Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01845 ATGGAGACTCGCGCCGCCGCAAAGAGAAAGGCAAACGCCGCCGCAGTAGTCATGGTTGATATACTCCACCCCAGGAAACAACGAGTTGTGTTGGGTGAACTTCCCAATTTTTCAAATGTTCCCACAACTCAAAATCTTCGCAAAGAGAAACTGCCATGTCGGAAGAATCTCAGTGTCAAAAAACCATCTCCCACAAACAACACTATTTCTTCTTCACCTGATCCTTATGTTTCCGACATCTATCAATACCTTCGTGCAATGGAGTTAAAGAGAAGGCCAATGATTGATTATATGGAGAAAGTTCAGAGAGTTGTTACGGCAAACATGCGATCGATTTTAGTGGATTGGTTGGTGGATGTTGCCCAGGAGTATAAGCTTTTGTCTGAAACTCTTCATTTATCTGTGTCTTACATTGATAGGTTTTTGTCACTTAATCGAGTGAACAAATCGAGACTGCAGTTACTGGGTGTTTCCTCCATGCTTATTGCTTCGAAGTATGAAGAAATTAATCCACCACGTGTGGATAAATTCTGTAGCATCACTGATAACACTTATGATAAAGGAGAGGTTGTGAAGATGGAAGCTGAAATACTTAAATCACTAAATTTTGAAATGGGCAATCCTACTGCAATTACTTTTCTAAGGAGGCTTCTTGATGCTACTTCTGAGAAACAAAAAACCCCAAATTTGCAGATTGAATTTCTGGGCTGTTATCTTGTTGATTTAAGTTTGTTGGATTACGATTGCATAAGATTTCTGCCTTCTATTGTGGCTGCATCAGTTGTATTTCTTGCCAGGTTTATTATTTGCCCTGAAGTGCATCCTTGGACTTCTTCCTTGTGTGAATGCTCGGGGTACAAATCAGTTGAACTGAAAGAATGTGTCCTTATCTTGCATGACTTGTATTTTTCTAGAAAGGCGGGGTCCTTTCAAGCAGTTAGGGAGAAATACAAGCAGCACAAGTTCAAGTACGTGGCAAACCTGCCTTCGCCTCCACATGTACCAAGTCATTACTTGGAAGATTAG 1026 0.4074 METRAAAKRKANAAAVVMVDILHPRKQRVVLGELPNFSNVPTTQNLRKEKLPCRKNLSVKKPSPTNNTISSSPDPYVSDIYQYLRAMELKRRPMIDYMEKVQRVVTANMRSILVDWLVDVAQEYKLLSETLHLSVSYIDRFLSLNRVNKSRLQLLGVSSMLIASKYEEINPPRVDKFCSITDNTYDKGEVVKMEAEILKSLNFEMGNPTAITFLRRLLDATSEKQKTPNLQIEFLGCYLVDLSLLDYDCIRFLPSIVAASVVFLARFIICPEVHPWTSSLCECSGYKSVELKECVLILHDLYFSRKAGSFQAVREKYKQHKFKYVANLPSPPHVPSHYLED 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01845 341 PANTHER CYCLIN-A3-1-RELATED 20 340 - -
Cca03g01845 341 SUPERFAMILY Cyclin-like 208 333 IPR036915 -
Cca03g01845 341 Gene3D - 79 327 - -
Cca03g01845 341 CDD CYCLIN 109 198 IPR013763 -
Cca03g01845 341 Pfam Cyclin, C-terminal domain 208 330 IPR004367 -
Cca03g01845 341 SMART Cyclin_C_2 208 331 IPR004367 -
Cca03g01845 341 Gene3D - 93 206 - -
Cca03g01845 341 PANTHER CYCLINS 20 340 IPR039361 -
Cca03g01845 341 CDD CYCLIN 208 299 IPR013763 -
Cca03g01845 341 Pfam Cyclin, N-terminal domain 79 205 IPR006671 -
Cca03g01845 341 SMART cyclin_7 115 199 IPR013763 -
Cca03g01845 341 SMART cyclin_7 212 300 IPR013763 -
Cca03g01845 341 ProSitePatterns Cyclins signature. 110 141 IPR006671 -
Cca03g01845 341 SUPERFAMILY Cyclin-like 74 205 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01845 Cca-Chr3 37791725 37794054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01845 3 341 Core Cell Cycle Gene Families AT5G43080 56.936 5.84e-135 386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00928 05 24923474 24929076 Cca03g01845 03 37791725 37794054 PCT